Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2f18
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 33 0.16
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 29 2.6
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3) 29 3.5
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06) 29 4.6
SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12) 28 6.1
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 28 6.1
SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36) 28 8.0
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = +2
Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTK 526
I + G ++ E +H S+F +Y+LP + V++ +T DG L + A +E +
Sbjct: 64 IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEALKAE----PQ 118
Query: 527 NTERVVPIVETGAPYKKDEPVEKTTVETLDVST 625
TE + TG+ + +K TLDVS+
Sbjct: 119 ETEVSLVGASTGSAGDIAKIDDKRFTVTLDVSS 151
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 419 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 571
YS+ S + SD YL+ TA +SE +D + R V I TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219
>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
Length = 444
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 143 PVTITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGP 253
P T T DQ + + + SPFS APL P FVD P
Sbjct: 221 PETFTSDQLSPTYSSPSPFSSKAPL----PVFVDFTP 253
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 422 SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKT 598
++PVN+ A G +VT ++ V + T V P+V A K EP +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307
>SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)
Length = 371
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -3
Query: 258 ILGPMSTKVGISFHRGANRLNGERFSHGNVNWSSVMVTGCTITSLSRAGKAVTVVKPAKA 79
I+GP+ K G F R G F NW V+ T T +S A + VV+PA
Sbjct: 217 IMGPLWFKHGDIFPVARLRFEGFMFDVPR-NWKQVLRTLYGRTGISAAVPTLMVVEPAPT 275
Query: 78 MK 73
K
Sbjct: 276 QK 277
>SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)
Length = 275
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 258 ILGPMSTKVGISFHRGANRLNGERFSHGN---VNWSSVMVTGCTITSLSR 118
+ G T+VGI H G NR+ + F H V V+ G T +L R
Sbjct: 209 VAGEKKTEVGIKIHSGRNRIVRKIFEHFGYKVVKLDRVIFAGLTKKNLPR 258
>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
Length = 1035
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 359 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 448
G+ +E+D DV+A Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274
>SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +2
Query: 425 LPVNSSAA-DVTAELTSDGYLVVTAPISENVDKTKNTERVVPI---VETGAPYKKDEPVE 592
+ +N AA D + +DG+L + +E T+ + ++ P VE+ PY EPV
Sbjct: 806 IELNQGAAIDSSNPFLTDGFLATMS--AEQAYGTRCSTQLQPDRGGVESEDPYHPSEPVH 863
Query: 593 KTTVETLDVSTTQEPXDISSSGSD 664
+ +S T + S+G+D
Sbjct: 864 HIVRMAIGISGTHAEQEHGSAGAD 887
>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +2
Query: 383 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 562
D DV+A Q YS PV + + + G L T + +KT+N + I+E
Sbjct: 61 DFDVYAHQSETEYSGPVPDPNSRPSGTYSKIGTLNATKLWTSFGNKTQNVQTFSLILENS 120
Query: 563 APY 571
PY
Sbjct: 121 KPY 123
>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
Length = 617
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 383 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 562
D DV+A Q YS PV + + G L T +KT+N + + I+E
Sbjct: 137 DFDVYAHQSETQYSGPVPDPNNSPSGTCSKIGTLNATELSPSLGNKTQNVQTLSLILENS 196
Query: 563 APY 571
PY
Sbjct: 197 KPY 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,131
Number of Sequences: 59808
Number of extensions: 347616
Number of successful extensions: 1224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -