Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2f18
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 39 0.003
M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein ( C.ele... 33 0.25
AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock pr... 33 0.25
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 31 0.76
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 30 1.3
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 29 3.1
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 29 3.1
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 29 3.1
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 5.4
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 28 5.4
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 28 7.1
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 28 7.1
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 28 7.1
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 28 7.1
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 28 7.1
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTK 526
I V+GS KED + S F + LP + V ++LT+DG+L + A E K +
Sbjct: 104 IIVEGSHGEKEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHLTIDAKAPE--PKQE 161
Query: 527 NTERV-VPIVETGAPYKK 577
+ + ++ T A +K
Sbjct: 162 GARPIQIKVINTSAEQQK 179
>M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 145
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 353 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENV 514
+QG QE K D H F LP + V + L+ DG L + AP E V
Sbjct: 75 IQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAV 127
>AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock
protein protein 16.2 protein.
Length = 145
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 353 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENV 514
+QG QE K D H F LP + V + L+ DG L + AP E V
Sbjct: 75 IQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAV 127
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 31.1 bits (67), Expect = 0.76
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = +2
Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 592
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 429 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQ 488
Query: 593 KTTVETLDVSTTQEPXDISSSGSDCSTGT 679
TT+ + ++T+ P SSS + T T
Sbjct: 489 TTTITAPETTSTEPP---SSSTTPVQTTT 514
Score = 31.1 bits (67), Expect = 0.76
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = +2
Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 592
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 751 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQ 810
Query: 593 KTTVETLDVSTTQEPXDISSSGSDCSTGT 679
TT+ + ++T+ P SSS + T T
Sbjct: 811 TTTITAPETTSTEPP---SSSNTPVQTTT 836
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = +2
Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 592
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 682 TSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQ 741
Query: 593 KTTVETLDVSTTQEPXDISSSGSDCSTGT 679
TT+ + ++T+ P SSS + T T
Sbjct: 742 TTTITAPETTSTEPP---SSSTTPVQTTT 767
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = +2
Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 592
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 820 TSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQ 879
Query: 593 KTTVETLDVSTTQEPXDISSSGSDCSTGT 679
TT+ + ++T+ P SSS + T T
Sbjct: 880 TTTITAPETTSTEPP---SSSTTPVQTTT 905
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = +2
Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 592
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 360 TRTEPPSSSTTPVQNTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQ 419
Query: 593 KTTVETLDVSTTQEPXDISSSGSDCSTGT 679
TT+ + ++T+ P SSS + T T
Sbjct: 420 TTTITAPETTSTEPP---SSSTTPVQTTT 445
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 434 NSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVEKTTVET 610
+SS V T+ T P S + + T P T P PV+ TT+
Sbjct: 251 SSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITA 310
Query: 611 LDVSTTQEPXDISSSGSDCSTGT 679
+ ++T+ P SSS + T T
Sbjct: 311 PETTSTEPP---SSSTTPVQTTT 330
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +2
Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 592
T + P +SS V + T P S + + T P T P PV+
Sbjct: 866 TSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQ 925
Query: 593 KTTVETLDVSTTQEPXDISSSGSDCSTGT 679
TT+ + ++T+ P SSS + T T
Sbjct: 926 TTTITAPETTSTEPP---SSSTTPVQTTT 951
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 496
+ + E + D+H A + Y LP + + V + L + G L +TA
Sbjct: 57 LLIHCRHETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 508
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 51 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 103
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 508
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 148 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 200
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 508
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 162 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 214
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 523 EKYRARCTYCRDWRSVQEGRACR 591
+++R+ CT +W S+ G ACR
Sbjct: 146 DRWRSVCTMVTNWTSIDTGTACR 168
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = +2
Query: 491 TAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTV------ETLDVSTTQEPXDISS 652
T ++EN+D+ TE+ + T +K E+TT +T +TT++P S
Sbjct: 788 TTVVAENIDEVTTTEKEKVVQTTPITTEKSTTQEETTTTTTTTEKTTSKTTTEKPTTSES 847
Query: 653 SGSDCST 673
+ ++ +T
Sbjct: 848 ATTETTT 854
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 461 ELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQ 631
E + GY PI ++ + +T+R P V P D P +K + LDV +Q
Sbjct: 1734 ENKTSGYDSSGNPI-RSITSSGDTQRAPPYVSNLLPSSNDSPDDKVIKQVLDVMFSQ 1789
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
A + C +++YR+RC YCR + ++ G
Sbjct: 149 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 176
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
A + C +++YR+RC YCR + ++ G
Sbjct: 155 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 182
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,404
Number of Sequences: 27780
Number of extensions: 256238
Number of successful extensions: 967
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -