Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2f12
(510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 226 9e-60
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) 34 0.059
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34) 33 0.10
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_48293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 28 5.1
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 27 6.8
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 27 9.0
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 226 bits (552), Expect = 9e-60
Identities = 103/155 (66%), Positives = 127/155 (81%), Gaps = 12/155 (7%)
Frame = +3
Query: 12 MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTP------------REA 155
MA+QTER++QKQ +F NRK+ +G +K LR+ ++VGLGFKTP REA
Sbjct: 1 MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60
Query: 156 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 335
IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++
Sbjct: 61 IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120
Query: 336 VHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 440
H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 121 AHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155
>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
Length = 73
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 372 GDIVTIGECRPLSKTVRFNVLKV 440
GD+V I ECRPLSK +FNV ++
Sbjct: 29 GDVVRIKECRPLSKMKKFNVEEI 51
>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
Length = 208
Score = 33.5 bits (73), Expect = 0.10
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +3
Query: 192 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 371
T + R ++ G+V KM +TI + + P Y + + + H + +
Sbjct: 5 TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62
Query: 372 GDIVTIGECRPLSKTVRFNVLKV 440
GD V I E RPLS T R+ ++++
Sbjct: 63 GDRVRIMETRPLSATKRWRLVEI 85
>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 122 ILVVSQRFSAPLHTNTFLAVQ 60
ILV+ Q F P HTN F+A Q
Sbjct: 78 ILVLVQPFPLPYHTNAFIAAQ 98
>SB_48293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 47 TYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSPRGD 157
++ LS+ + R WC+ + + E Q GP ++ + R D
Sbjct: 920 SFKLSDIKGRIWCQPDSHSFEWFQKSGPGWRSTRRSD 956
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 219 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 356
I+ VV K K + VI RD+ Y ++ +R VH SP F
Sbjct: 64 IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 163 PSIASRGVLKPRPTSLWYLNG 101
P++ +GV PRPT WY G
Sbjct: 654 PTLQCKGVGDPRPTITWYRKG 674
>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 754
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 72 KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 182
+ + V + + PL H D+ + +K P + Y+DK+
Sbjct: 271 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 307
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 72 KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 182
+ + V + + PL H D+ + +K P + Y+DK+
Sbjct: 1552 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 1588
>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2342
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 38 PKTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSPRGD*GYL 169
P +S +W EA+++ V G GP + PRG Y+
Sbjct: 1703 PNKVFSQGLRTTDFWMEAKRRFVRPSPGGGPAARPFPRGKFDYI 1746
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,295,597
Number of Sequences: 59808
Number of extensions: 312413
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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