Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f12
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   214   4e-56
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   7.9  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  214 bits (522), Expect = 4e-56
 Identities = 100/143 (69%), Positives = 117/143 (81%)
 Frame = +3

Query: 12  MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 191
           M++QTER+F KQPTV LN K  I +  S+K  RY ++VGLGFK PR+A+EGTYIDKKCP+
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPW 59

Query: 192 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 371
            GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  
Sbjct: 60  AGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHP 119

Query: 372 GDIVTIGECRPLSKTVRFNVLKV 440
           GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 120 GDLVTIGECRPLSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 434 QNIESNCFGQRSAFADRYNITNLHVPEARRQMYGH 330
           +++E  CF Q   F D +N+T L + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +3

Query: 6   SKMADQTERSFQKQPTVFLNRKKG-IGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 182
           SK+     R F+K+      +  G  G+K  R+  R    +    K  RE +     D K
Sbjct: 9   SKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPK 68

Query: 183 CPFTGNVSIRGRILTGVVQKMKMQRTIVI 269
             F GN  +R  +  GV+ + KM+   V+
Sbjct: 69  RLFEGNALLRRLVKIGVLDETKMKLDYVL 97


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 236 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 355
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 41   KTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSP 148
            K TY +++P +   C  EQ        C P  Q  P
Sbjct: 1847 KCTYDITKPMDPITCSCEQNAAAHNTDCSPICQKQP 1882


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,062
Number of Sequences: 27780
Number of extensions: 231085
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)