Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2f07
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 289 3e-79
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.72
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 28 1.3
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 1.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 3.8
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 3.8
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 6.7
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 8.9
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 25 8.9
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 289 bits (709), Expect = 3e-79
Identities = 139/237 (58%), Positives = 175/237 (73%), Gaps = 1/237 (0%)
Frame = +3
Query: 51 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 230
MPQNEYIE + +GRR D+ RGIKAK++ ++RR EKIQ
Sbjct: 1 MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60
Query: 231 MKKKIKAHEEKNV-KHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 407
MKK IK HEE+N + ++ +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61 MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120
Query: 408 IPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKK 587
+P+VR A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ FTR+P K+ERFIRPMALR KK
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKK 180
Query: 588 AHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVV 758
A+VTH EL T LPIIGVKKNP S YT LGV+TKGTVIEVN+SELGLVT GKVV
Sbjct: 181 ANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLTKGTVIEVNVSELGLVTSGGKVV 237
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 0.72
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 296 FGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 123
F LL F +L F+ F F F F++ I YF SF F LF F+ + F +
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170
Query: 122 FSL 114
FSL
Sbjct: 171 FSL 173
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 564 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 686
PM F + HP K FC+P + ++ P LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/84 (26%), Positives = 45/84 (53%)
Frame = +3
Query: 207 ERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 386
E+ + K+++ ++ +K ++ TEK+ + + +R VQS + +M +QK +E
Sbjct: 82 EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140
Query: 387 AGKWDVPIPKVRAQADAEVFKVLK 458
K+ KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +3
Query: 423 AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 560
A +++ K+L + K+ KR+V+++T + N T + +R++
Sbjct: 883 ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 257 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 135
FV D FL+ LF LI +F+ F LFS F S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 276 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 410
N K +E + +++D+ R+ +LSN+ K K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 204 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPV 311
+ + NE + + + ++ E+N NTE++AE + P+
Sbjct: 98 ENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3
Query: 51 MPQNEYIERHQKL 89
+PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,922
Number of Sequences: 5004
Number of extensions: 53570
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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