Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e22
         (201 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)                      27   3.1  
SB_39669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_36088| Best HMM Match : RVT_1 (HMM E-Value=9e-12)                   26   4.1  
SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   4.1  
SB_53800| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_27268| Best HMM Match : RVT_1 (HMM E-Value=2.24208e-44)             26   4.1  
SB_2851| Best HMM Match : RVT_1 (HMM E-Value=3.50325e-43)              26   4.1  
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)               26   5.5  
SB_11800| Best HMM Match : Ion_trans_2 (HMM E-Value=6.3e-14)           26   5.5  
SB_2705| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.6  

>SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)
          Length = 187

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 38  RHDISRRLYSLKTTAANVPYS 100
           RHD  RR YS  T A++VP S
Sbjct: 95  RHDKRRRRYSSSTAASSVPNS 115


>SB_39669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 SNLSTVHWQLLFLMNTIDD 51
           S L T+ W   FL +TIDD
Sbjct: 120 STLKTISWDTAFLFDTIDD 138


>SB_36088| Best HMM Match : RVT_1 (HMM E-Value=9e-12)
          Length = 471

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 SNLSTVHWQLLFLMNTIDD 51
           S L T+ W   FL +TIDD
Sbjct: 11  STLKTIPWDTAFLFDTIDD 29


>SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 SNLSTVHWQLLFLMNTIDD 51
           S L T+ W   FL +TIDD
Sbjct: 472 STLKTIPWDTAFLFDTIDD 490


>SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 SNLSTVHWQLLFLMNTIDD 51
           S L T+ W   FL +TIDD
Sbjct: 409 STLKTIPWDTAFLFDTIDD 427


>SB_53800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 SNLSTVHWQLLFLMNTIDD 51
           S L T+ W   FL +TIDD
Sbjct: 237 STLKTIPWDTAFLFDTIDD 255


>SB_27268| Best HMM Match : RVT_1 (HMM E-Value=2.24208e-44)
          Length = 548

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 SNLSTVHWQLLFLMNTIDD 51
           S L T+ W   FL +TIDD
Sbjct: 11  STLKTIPWDTAFLFDTIDD 29


>SB_2851| Best HMM Match : RVT_1 (HMM E-Value=3.50325e-43)
          Length = 890

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 SNLSTVHWQLLFLMNTIDD 51
           S L T+ W   FL +TIDD
Sbjct: 176 STLKTIPWDTAFLFDTIDD 194


>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
          Length = 1085

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 74  TTAANVPYSNYYMYKSVLSIVM 139
           TT   VP++NYY Y+ +  +++
Sbjct: 641 TTTTTVPWNNYYYYRPLEQLLL 662



 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 74  TTAANVPYSNYYMYK 118
           TT   VP++NYY Y+
Sbjct: 369 TTTTTVPWNNYYYYR 383



 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 74  TTAANVPYSNYYMYK 118
           TT   VP++NYY Y+
Sbjct: 729 TTTTTVPWNNYYYYR 743


>SB_11800| Best HMM Match : Ion_trans_2 (HMM E-Value=6.3e-14)
          Length = 479

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 158 KSVLYDSLQ*KVQ--IYTCSNLSTVHWQLLFLMNTID 54
           K ++YD L+  ++   +TC N   +HW +L    T++
Sbjct: 57  KGIMYDYLERLLKQCTHTCKNPPKIHWTILGGNKTVE 93


>SB_2705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 SNLSTVHWQLLFLMNTIDD 51
           S L T+ W   FL +TIDD
Sbjct: 127 SILKTIPWDTAFLFDTIDD 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,327,467
Number of Sequences: 59808
Number of extensions: 80021
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 16,821,457
effective HSP length: 45
effective length of database: 14,130,097
effective search space used: 296732037
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)