Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e22
         (201 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.11 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.15 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   3.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   4.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   4.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    19   5.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   5.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   7.4  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.6 bits (51), Expect = 0.11
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 136 NESYSTLLVTSINVIHHY 189
           N+ Y+ L  T+INVI H+
Sbjct: 85  NKEYNMLRTTAINVIRHF 102


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.15
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 74  TTAANVPYSNYYMYKSVLSIV 136
           T +   PY +YY Y  VL++V
Sbjct: 630 TLSTKCPYPSYYSYIGVLTLV 650


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 66  EYNRRLMSCLYRITRSVN 13
           E  RRLMS   R+++SVN
Sbjct: 786 EVMRRLMSEDKRLSKSVN 803


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +2

Query: 92  PYSNYYMY 115
           PY+NYY++
Sbjct: 141 PYNNYYIW 148


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +2

Query: 92  PYSNYYMY 115
           PY+NYY++
Sbjct: 141 PYNNYYIW 148


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 69  NEYNRRLMSCLYRITRSVN 13
           N Y+R  +SC  ++T+  N
Sbjct: 112 NPYDRDSLSCWLQMTKHHN 130


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 107 YMYKSVLSIVMNH 145
           Y Y  ++S V+NH
Sbjct: 229 YYYSQIVSHVVNH 241


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 69  NEYNRRLMSCLYRITRSVN 13
           NE+   L  CLY  + ++N
Sbjct: 306 NEWLYILSGCLYYFSTTIN 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,259
Number of Sequences: 438
Number of extensions: 935
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2659293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)