Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e20
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.24 
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    27   3.0  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    25   6.8  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   9.0  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +3

Query: 408 SLEHNYTREIVRLMTTLPVPSNRNTPSHSCTERHAQLFLPPAATVSVEGCDACAPEYPGT 587
           +L H+ T +       + +PS   TP+++ +  H+ L  P A+T++     A     P  
Sbjct: 400 NLNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSL 459

Query: 588 AS 593
           A+
Sbjct: 460 AN 461


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 462 VPSNRNTPSHSCTERHAQLFLPPAAT 539
           +  +RN P    TE H  L+ PPAAT
Sbjct: 14  ISRSRNRPYFFNTETHESLWEPPAAT 39


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 278 AVMTARILDLGVCCINHRRDR 340
           AV T+RIL L   C NH++D+
Sbjct: 220 AVYTSRILALSDHCKNHKKDQ 240


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 562 ASHPSTETVAAGGKNN 515
           A  PST+++AAGG NN
Sbjct: 70  AFSPSTKSIAAGGLNN 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,010
Number of Sequences: 5004
Number of extensions: 47583
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)