Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e20
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0170 - 18888849-18889880                                         29   2.3  
03_05_0799 + 27809301-27811550                                         29   4.0  
01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852           27   9.3  

>01_05_0170 - 18888849-18889880
          Length = 343

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 540 VSVEGCDACAPEYPGTASCQSAGVCSQ 620
           + V+ CD+C   Y   ASC  A +CS+
Sbjct: 262 IVVQSCDSCTRTYMIPASCDFAALCSR 288


>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -1

Query: 414 PKNGSTELCQE-TSCGVGILLFLHTTRSRR*LMQQTPKS--RIRAVMTASMRM 265
           P    T LC++ TSC   +  F HTT   R L   T  +    RA  TA+M M
Sbjct: 339 PAQYRTRLCKDGTSCNRRVCFFAHTTDELRPLYVSTGSAVPSPRASATATMEM 391


>01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852
          Length = 253

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 396 PWNRSLEHNYTREIVRLMTTLPVPSNRNTPSHSCTERHAQLFLP 527
           PW R   +  T E  ++  T P PS    PS S T R+A   LP
Sbjct: 173 PWQRQYLNEKTNENFQVGATDPFPSQHVAPS-SFTTRNALAPLP 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,186,877
Number of Sequences: 37544
Number of extensions: 318535
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)