Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e20
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)            28   7.2  
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           27   9.5  
SB_19226| Best HMM Match : I-set (HMM E-Value=0)                       27   9.5  
SB_23507| Best HMM Match : TSP_1 (HMM E-Value=0.0057)                  27   9.5  

>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 610  TPADWHDAVPGYSGAHASHPSTETVAAGGKNNCAWRSVQECDGVLRLDGT 461
            TP    D +PGY  +  S   TE   A  K   A++ V +  GV RL  T
Sbjct: 1897 TPPPTSDRIPGYEDSEGS--DTENEQAITKRKTAFQDVSDVHGVARLQDT 1944


>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 414 EHNYTREIVRLMTTLPVPSNRNTPSHSCTERHAQL 518
           EH +T +I +L  T+P     NT    C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 411 LEHNYTREIVRLMTTLPVPSNR--NTP 485
           ++HNYT  ++  + TLP P N+  NTP
Sbjct: 347 IKHNYTPAVLNHVNTLPQPHNKISNTP 373


>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 522 LPPAATVSVEGCDACAPEYPGTASCQSAGVCSQC 623
           +P  A+    GC +C    PG ASCQ  G C+ C
Sbjct: 475 VPGCASCPPPGCASCP--LPGCASCQPPG-CASC 505


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 495  CTERHAQLFLPPAATVSVEGCDAC-APEYPGTASCQSAGV 611
            C  R  QL+LP  AT  +EG  +C  P+  G      AGV
Sbjct: 1145 CDVRDDQLYLPAYATRPLEGQTSCKCPDVVGCGVMWPAGV 1184


>SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)
          Length = 404

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 272 IDAVMTA-RILDLGVCCINHRRDRVVC 349
           +DA +T   + + GV C NH +DR  C
Sbjct: 5   VDATVTTDAVFEFGVGCQNHHKDRTSC 31


>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 628 DQHWLHTPADWHDAVPGYSGAHASHPSTETVAAGGKNN 515
           D H  H   D H A  G++GAH SH  T    + G  N
Sbjct: 52  DTHISHGQTDNH-APHGHTGAHVSHGRTNNHTSHGHMN 88


>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1500

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 338 RVVCRKSKIPTPQDVSWHSSVEPFFG 415
           ++ C  S IP P+DV W+    P  G
Sbjct: 674 QITCEVSAIPYPRDVQWYHDDIPLTG 699


>SB_23507| Best HMM Match : TSP_1 (HMM E-Value=0.0057)
          Length = 187

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 625 QHWLHTPA-DWHDAVPGYSGAHASHPSTETVAAGGKNNCA-WRS 500
           + W   P+ +WH    GY  A    P T TV    +N C  W+S
Sbjct: 10  EEWKRHPSYNWHFYYQGYFIAQYEGPYTFTVTCRMENGCEFWKS 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,260,312
Number of Sequences: 59808
Number of extensions: 380716
Number of successful extensions: 1156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)