Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2e20
(630 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121038-1|AAI21039.1| 501|Homo sapiens PRDM5 protein protein. 31 2.5
BC121037-1|AAI21038.1| 599|Homo sapiens PRDM5 protein protein. 31 2.5
AF272897-1|AAF78077.1| 630|Homo sapiens PR-domain zinc finger p... 31 2.5
Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)... 30 7.8
U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain pro... 30 7.8
AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 7.8
AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 7.8
AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 7.8
AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 7.8
AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 7.8
AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 7.8
AB208922-1|BAD92159.1| 1853|Homo sapiens laminin alpha 2 subunit... 30 7.8
>BC121038-1|AAI21039.1| 501|Homo sapiens PRDM5 protein protein.
Length = 501
Score = 31.5 bits (68), Expect = 2.5
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 475 AIRRRTLVPNATRSYFCHQ-QQRFPSKGVTHVHLSTLEQRHANRR 606
+++R L+ N+ R++ CH F K +VH+ + +RH R
Sbjct: 387 SLQRHLLIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYR 431
>BC121037-1|AAI21038.1| 599|Homo sapiens PRDM5 protein protein.
Length = 599
Score = 31.5 bits (68), Expect = 2.5
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 475 AIRRRTLVPNATRSYFCHQ-QQRFPSKGVTHVHLSTLEQRHANRR 606
+++R L+ N+ R++ CH F K +VH+ + +RH R
Sbjct: 387 SLQRHLLIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYR 431
>AF272897-1|AAF78077.1| 630|Homo sapiens PR-domain zinc finger
protein 5 protein.
Length = 630
Score = 31.5 bits (68), Expect = 2.5
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 475 AIRRRTLVPNATRSYFCHQ-QQRFPSKGVTHVHLSTLEQRHANRR 606
+++R L+ N+ R++ CH F K +VH+ + +RH R
Sbjct: 418 SLQRHLLIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYR 462
>Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)
protein.
Length = 3110
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 459 PVPSNRNTPSHSCTERHAQLFLPPAATVSVEG--CDACAPEYPGTASCQSAGVCSQC 623
P+ S+ N S SC + A EG C+ CAP Y G+ G C +C
Sbjct: 1472 PLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPG-NPGGSCQEC 1527
>U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain protein.
Length = 3110
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 459 PVPSNRNTPSHSCTERHAQLFLPPAATVSVEG--CDACAPEYPGTASCQSAGVCSQC 623
P+ S+ N S SC + A EG C+ CAP Y G+ G C +C
Sbjct: 1472 PLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPG-NPGGSCQEC 1527
>AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 459 PVPSNRNTPSHSCTERHAQLFLPPAATVSVEG--CDACAPEYPGTASCQSAGVCSQC 623
P+ S+ N S SC + A EG C+ CAP Y G+ G C +C
Sbjct: 1472 PLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPG-NPGGSCQEC 1527
>AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 459 PVPSNRNTPSHSCTERHAQLFLPPAATVSVEG--CDACAPEYPGTASCQSAGVCSQC 623
P+ S+ N S SC + A EG C+ CAP Y G+ G C +C
Sbjct: 1472 PLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPG-NPGGSCQEC 1527
>AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 459 PVPSNRNTPSHSCTERHAQLFLPPAATVSVEG--CDACAPEYPGTASCQSAGVCSQC 623
P+ S+ N S SC + A EG C+ CAP Y G+ G C +C
Sbjct: 1472 PLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPG-NPGGSCQEC 1527
>AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 459 PVPSNRNTPSHSCTERHAQLFLPPAATVSVEG--CDACAPEYPGTASCQSAGVCSQC 623
P+ S+ N S SC + A EG C+ CAP Y G+ G C +C
Sbjct: 1472 PLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPG-NPGGSCQEC 1527
>AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 459 PVPSNRNTPSHSCTERHAQLFLPPAATVSVEG--CDACAPEYPGTASCQSAGVCSQC 623
P+ S+ N S SC + A EG C+ CAP Y G+ G C +C
Sbjct: 1472 PLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPG-NPGGSCQEC 1527
>AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 459 PVPSNRNTPSHSCTERHAQLFLPPAATVSVEG--CDACAPEYPGTASCQSAGVCSQC 623
P+ S+ N S SC + A EG C+ CAP Y G+ G C +C
Sbjct: 1472 PLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPG-NPGGSCQEC 1527
>AB208922-1|BAD92159.1| 1853|Homo sapiens laminin alpha 2 subunit
precursor variant protein.
Length = 1853
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 459 PVPSNRNTPSHSCTERHAQLFLPPAATVSVEG--CDACAPEYPGTASCQSAGVCSQC 623
P+ S+ N S SC + A EG C+ CAP Y G+ G C +C
Sbjct: 207 PLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPG-NPGGSCQEC 262
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,978,742
Number of Sequences: 237096
Number of extensions: 1680401
Number of successful extensions: 4296
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4295
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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