Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e20
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   4.8  
AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.    28   6.3  
AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.    28   6.3  
AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cel...    28   6.3  
AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cel...    28   6.3  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   8.4  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   8.4  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   8.4  

>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 613 HTPADWHDAVPGYSGAHASHPSTETVAAGGKNNCAWRSVQE 491
           + P   ++ VP Y       P TE+    G ++  W SV+E
Sbjct: 25  YVPPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = -3

Query: 601 DWHDAVPGYSGAHASHPSTETVAAGGKNNCAWRSVQECDGV 479
           +W+   P         P  E VA   +    W ++  CDG+
Sbjct: 123 EWYSGRPNGQARPRESPDGEFVAGTSQQGATWATISTCDGI 163


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 528 PAATVSVEGCDACAPEYPGTASCQSAGVCSQC 623
           P  T S  G   C P  PG+ S + +G C +C
Sbjct: 272 PPGTSSPGGSAECIPCSPGSFSSKGSGQCGRC 303


>AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 525 PPAATVSVEGCDACAPEYPGTASCQSA 605
           P A+  + E  DA APE PG+   Q A
Sbjct: 91  PDASAQASEASDASAPEVPGSTEAQDA 117


>AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 525 PPAATVSVEGCDACAPEYPGTASCQSA 605
           P A+  + E  DA APE PG+   Q A
Sbjct: 128 PDASAQASEASDASAPEVPGSTEAQDA 154


>AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform b protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 525 PPAATVSVEGCDACAPEYPGTASCQSA 605
           P A+  + E  DA APE PG+   Q A
Sbjct: 128 PDASAQASEASDASAPEVPGSTEAQDA 154


>AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform a protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 525 PPAATVSVEGCDACAPEYPGTASCQSA 605
           P A+  + E  DA APE PG+   Q A
Sbjct: 128 PDASAQASEASDASAPEVPGSTEAQDA 154


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 540  VSVEG--CDACAPEYPGTASCQSAGVC 614
            ++VEG  CD C P++ G + CQ    C
Sbjct: 2011 INVEGDSCDRCKPDHWGFSKCQGCQGC 2037


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 540  VSVEG--CDACAPEYPGTASCQSAGVC 614
            ++VEG  CD C P++ G + CQ    C
Sbjct: 2011 INVEGDSCDRCKPDHWGFSKCQGCQGC 2037


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 453 TLPVPSNRNTPSHSCTERHAQLFLPP 530
           TLPV S   T   +C +R  QL +PP
Sbjct: 41  TLPVTSEHKTAHDACIKRLEQLEIPP 66


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 540  VSVEG--CDACAPEYPGTASCQSAGVC 614
            ++VEG  CD C P++ G + CQ    C
Sbjct: 2011 INVEGDSCDRCKPDHWGFSKCQGCQGC 2037


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 540  VSVEG--CDACAPEYPGTASCQSAGVC 614
            ++VEG  CD C P++ G + CQ    C
Sbjct: 2011 INVEGDSCDRCKPDHWGFSKCQGCQGC 2037


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,086,078
Number of Sequences: 27780
Number of extensions: 278984
Number of successful extensions: 794
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)