Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e14
         (229 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.19 
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_13879| Best HMM Match : UIM (HMM E-Value=4.1e-06)                   27   1.8  
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)          27   3.2  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.2  
SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1)             26   4.2  
SB_38466| Best HMM Match : DUF59 (HMM E-Value=8.2)                     26   5.5  
SB_5490| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.5  
SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)                   26   5.5  
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                 26   5.5  
SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)             25   7.3  
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)                 25   7.3  
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)                       25   9.7  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  

>SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 47  YVPTSISGSKKRKNSVPAKQRS-SIKNRRNTTAAPTLLMVSDNTQDTN 187
           Y PTS   S KR +S+P   R  SI N  +T+ A  + +   + +D N
Sbjct: 239 YSPTSSRSSNKRHSSLPGPSRQRSITNVSDTSTAGLICLDDTDDEDQN 286


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 5   TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNT 175
           TVA K+ V P TT    T+++       +    Q +++     TTAAP    V + T
Sbjct: 800 TVAAKITVVPETTAAPDTTVAPETPVATNTTVAQETTL--TPETTAAPVTTSVPETT 854


>SB_13879| Best HMM Match : UIM (HMM E-Value=4.1e-06)
          Length = 290

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 59  SISGSKKRKNSVPAKQRSSIKNRRNTTAAP 148
           ++S   KR      K+R   KNR NTTA+P
Sbjct: 233 ALSALMKRPPYCKVKRRPKSKNRTNTTASP 262


>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
          Length = 497

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 37  YYRIRAHFD*RQQEKKKLSSGQTTIFYKKSPQHYCGSNTFN 159
           YYR  AH +  +QE+KKLS  ++ + +  +    C  N  N
Sbjct: 92  YYRQLAHNEKIEQERKKLSKRRSYMHFAINEMGPCCDNDDN 132


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +2

Query: 2   KTVALKLPVAPSTTEYVPTSISGSK---KRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDN 172
           + VA+  PV P+TT  + +S+  S        S P+ + S   N   +T A  + + S  
Sbjct: 666 EAVAISSPVLPTTTSVLTSSMESSSMATTSTTSAPSLESSMTTNSTTSTLAQAVAISSSV 725

Query: 173 TQDT 184
           +  T
Sbjct: 726 SPTT 729



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 2    KTVALKLPVAPSTTEYVPTSISGSK---KRKNSVPAKQRSSIKNRRNTTAAPTLLMVS 166
            + VA+  PV P+TT  + +S+  S       +S P+ + S   N   +T A  + + S
Sbjct: 870  EAVAISSPVLPTTTSVLTSSMESSSMATTSTSSTPSLESSMTTNSTTSTLAEAVAISS 927



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   KTVALKLPVAPSTTEYVPTSISGSKKRKN--SVPAKQRSSIKNRRNTTAAPTLLMVS 166
           + VA   PV P+TT  + +S+  S    +  S P+ + S   N   +T A  + + S
Sbjct: 514 EAVATSSPVLPTTTSVLTSSMESSMATTSTTSTPSLESSMTTNNTTSTLAEAVAISS 570



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 2   KTVALKLPVAPSTTEYVPTSISGSK---KRKNSVPAKQRSSIKNRRNTTAAPTLLMVS 166
           + VA+  PV P+TT  + +S+  S        S P+ + S   N   +T A  + + S
Sbjct: 768 EAVAISSPVLPTTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISS 825



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 2   KTVALKLPVAPSTTEYVPTSISGSK---KRKNSVPAKQRSSIKNRRNTTAAPTLLMVS 166
           + VA+  PV P+TT  + +S+  S        S P+ + S   N   +T A  + + S
Sbjct: 819 EAVAISSPVLPTTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISS 876


>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 20  LPVAPSTTEYVPTSISGSKKRKNSVPAKQRSS 115
           LPV+P T   VP  I G +    S P + R++
Sbjct: 236 LPVSPGTAGDVPVEIQGWENAPESRPPRARAT 267


>SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1)
          Length = 886

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 23  PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDN 172
           P   +  E  P  ++  K   + +  +QRS     +  T +PTL ++S+N
Sbjct: 559 PSRGTAGEAEPRDVTRVKDEGHQILQRQRSISLTEKRRTKSPTLSLLSEN 608


>SB_38466| Best HMM Match : DUF59 (HMM E-Value=8.2)
          Length = 360

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 62  ISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 151
           ++GS ++  + PA+Q  S++ + NTT   T
Sbjct: 41  VAGSFRQSQAEPARQVHSLQQKANTTTQAT 70


>SB_5490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 50  VPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMV 163
           V TS S S+KR +   ++QR+  + +++  A  TLL+V
Sbjct: 494 VVTSRSMSRKRASQKKSQQRTEQRFKQDNKAVRTLLIV 531


>SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)
          Length = 551

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   KTVALKLPVAPSTTEYVPTSIS 67
           K V +K+P +  T EYVP ++S
Sbjct: 285 KKVVMKVPGSEKTIEYVPQNVS 306


>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 218 NVQSFLFILTYLYLVYY 168
           N+Q FLF  T+L+  +Y
Sbjct: 36  NIQQFLFFFTFLFTAFY 52


>SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)
          Length = 946

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 98  AKQRSSIKNRRNTTAAPTLLMVSDNTQDTNMS 193
           + +++ +K+  + +A P+L  +SDNT D  ++
Sbjct: 829 SSEKTFVKSSASISAPPSLNDISDNTSDVTIT 860


>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
          Length = 665

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 5   TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNT 175
           TVA ++ VAP TT    T+++              ++      TTAAP   +V D T
Sbjct: 599 TVAPEITVAPETTAAPETTVAPETTMAPETTVAAETTA--AAETTAAPETTVVPDTT 653


>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
          Length = 404

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 53  PTSISGSKKRKNSVPAKQ 106
           PT+I G K+  NSVPAK+
Sbjct: 307 PTAIPGVKEFLNSVPAKK 324


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 5   TVALKLPVAPSTTEYVPTSISGSKKRKNSVP 97
           TVA K   AP TT    T+ + +   K +VP
Sbjct: 339 TVATKTTAAPETTSVPETTATNTAPDKTAVP 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,903,078
Number of Sequences: 59808
Number of extensions: 111962
Number of successful extensions: 348
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 16,821,457
effective HSP length: 53
effective length of database: 13,651,633
effective search space used: 300335926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)