Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e13
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    24   1.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   3.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.2  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   5.5  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +3

Query: 453 NITLPKFQPDDANTDARAWLATAD-IC---LSDREIQGSKLILILSKAMKGSAATWFS-- 614
           N+T+PK++P+ +  D    L  A  +C   L   ++    L  I +  M   +A   S  
Sbjct: 145 NLTMPKYEPNPSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPPIFAPTMINPSAICESAA 204

Query: 615 QIVFPNMKWV 644
           Q++F N++WV
Sbjct: 205 QLLFMNVQWV 214


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 SLDRAASSVHQSH 101
           ++D AAS VHQ+H
Sbjct: 643 TIDEAASDVHQTH 655


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 SLDRAASSVHQSH 101
           ++D AAS VHQ+H
Sbjct: 643 TIDEAASDVHQTH 655


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 SLDRAASSVHQSH 101
           ++D AAS VHQ+H
Sbjct: 643 TIDEAASDVHQTH 655


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 SLDRAASSVHQSH 101
           ++D AAS VHQ+H
Sbjct: 643 TIDEAASDVHQTH 655


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 524 VRRGQPGPGVSVCI 483
           V R  PGP V VC+
Sbjct: 101 VNRKMPGPSVEVCL 114


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +3

Query: 453 NITLPKFQPDDANTD-ARAWLATADICLSD---REIQGSKLILILSKAMKGSAATWFS-- 614
           N+T+PK++P+ +  D   A   T  +C +     ++    L  I    M   +A   S  
Sbjct: 145 NLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINPSAICESAA 204

Query: 615 QIVFPNMKWV 644
           Q++F N++WV
Sbjct: 205 QLIFMNVQWV 214


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 285 DEESLSPTSEVGSVQAQNVNEQTTANDGWR 374
           ++++   +S+ G+ + +N    TTAN  WR
Sbjct: 120 EKKTTRKSSQQGNFEFRNTVGATTANIFWR 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,282
Number of Sequences: 336
Number of extensions: 4038
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)