Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2e13
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.85
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 27 2.0
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 27 2.6
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|... 27 2.6
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.4
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 3.4
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 26 4.5
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 26 6.0
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 7.9
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 7.9
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 327 QAQNVNEQTTANDGWRALFEAQQTSMKLLVEALTKPPNLEDKNITLPKFQP 479
+ NVN ++ W ++ Q+ + PP + DKNI LP+ P
Sbjct: 133 ERSNVNRKSNVLFCWSTAYQKQKRKTASYTNSPVTPP-INDKNILLPEQSP 182
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 450 KNITLPKFQPDDANTDARAWLATADICLSDREIQGSKLILILSK 581
K + P+ D N A+ T D+C D+ Q S L + LSK
Sbjct: 746 KLVLFPENTADSLNEVLAAYKNTLDLCSQDKRKQSSVLKINLSK 789
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 156 YCRNTTV*TEQRVRCTNLTLTISKLSNDPTRYVFMLTIYKMR 31
+C+N+ + + R T L +I + N PTR VF L + R
Sbjct: 185 FCKNSKLLSGSRDYGTQLFASILRNLNVPTRLVFSLQVLSFR 226
>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 542 TIRQANVRRGQPGPGVSVCIIRLKLRQRDVFILKIRW 432
T+ + RRG G GV ++ KL Q ++ L +RW
Sbjct: 88 TLTRGPNRRGNVGKGVKRPMVNKKLGQLELTSLDLRW 124
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2
Query: 63 YVFMLTIYKMRHTTIQAFS 7
Y+F++T YK RH ++A++
Sbjct: 3 YIFLITGYKYRHLNLEAYN 21
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 421 ASTSSFMLVCCASNNARHPSFAVVCSF 341
A+ S ++ +CCAS+ + +F + C F
Sbjct: 329 ATLSPYLNLCCASSETEYFNFGLSCGF 355
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 279 DIDEESLSPTSEVGSV 326
DID++ L PTS VGSV
Sbjct: 19 DIDKDGLIPTSHVGSV 34
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +3
Query: 336 NVNEQTTANDGW-RALFEAQQTSMKLLVEA----LTKPPNLEDKNITLPKFQPDDANTDA 500
N+ + T G R ++ +TS +++++A + P+ N P+ + DDA +DA
Sbjct: 225 NLIDDTPVTPGEARPAYDGYETSRQIVMDAEHALSSWVPSQPAVNFVKPQIE-DDAQSDA 283
Query: 501 RAW 509
R+W
Sbjct: 284 RSW 286
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 187 SLYNILLSTVIL*EYNSLDRAASSVHQSHFNYIQII 80
S++NI+ T L E+ + + AS + +HF + +I
Sbjct: 86 SVFNIIFQTAALPEHAATFQFASQAYNNHFFFQSLI 121
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 531 LSDREIQGSKLILILSKAMKGSAAT 605
+SD + GSK+I ++ KA G+AAT
Sbjct: 230 VSDGVVVGSKIIDLILKAEPGTAAT 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,144
Number of Sequences: 5004
Number of extensions: 64374
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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