Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2e13
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0758 + 31742696-31742798,31745020-31745187,31745284-317456... 34 0.12
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 33 0.16
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007 31 1.2
08_02_1165 + 24830547-24831154,24832048-24832159,24832250-248324... 30 1.5
01_01_0225 - 1911820-1912929,1913345-1913893,1914010-1914024 30 2.0
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334 29 4.7
09_02_0291 - 6980273-6980737,6980893-6981239,6981259-6981607 28 6.2
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 28 6.2
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 28 6.2
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 28 8.2
08_02_0855 - 21913291-21913347,21914117-21914211,21915077-219151... 28 8.2
08_02_0821 + 21545013-21545082,21545660-21545769,21546302-215463... 28 8.2
07_03_1593 + 28001165-28001193,28001214-28001288,28002004-28002796 28 8.2
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 28 8.2
04_03_0888 - 20559435-20559565,20559674-20559740,20560217-205604... 28 8.2
>01_06_0758 +
31742696-31742798,31745020-31745187,31745284-31745619,
31745748-31746340
Length = 399
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 237 FNPMTPTKPAATNGDIDEES-LSPTSEVGSVQAQNVNEQTTANDGW 371
F P P +NGD +E + P + G + N++EQT+A GW
Sbjct: 196 FTPDKPKDTVVSNGDFEEGPWMFPNTSFGVLLPTNLDEQTSALPGW 241
>01_05_0195 -
19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 237 FNPMTPTKPAATNGDIDEES-LSPTSEVGSVQAQNVNEQTTANDGW 371
F P P +NGD +E + P + G + N++EQT+A GW
Sbjct: 326 FTPDKPKDNVVSNGDFEEGPWMFPNTSFGVLLPTNLDEQTSALPGW 371
>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
Length = 952
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 385 SNNARHPSFAVVCSFTFCACTDPTSDVGERLSSSISPLVAAGLVGVM 245
+ NA P A VC F CAC + V SS+ +VAAG +G +
Sbjct: 18 NGNAAAP--ACVCGFPVCACAGAAA-VASAASSADMDIVAAGQIGAV 61
>08_02_1165 +
24830547-24831154,24832048-24832159,24832250-24832421,
24832486-24832700,24833922-24833996,24834367-24834390
Length = 401
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +3
Query: 321 SVQAQNVNEQTTANDGWRALFEAQQTSMKLLVEALTKPPNLEDKNITLPKFQPDDANTDA 500
++Q N + ND R +FE T M + + L K ++ + K +D+N D+
Sbjct: 253 NLQDPNNKRKIICNDELRLVFETDSTDMFKMNKLLAK--HIRPLEAKMLKILAEDSNRDS 310
Query: 501 RAWLATADICLSDREIQGSKLILILSKAM 587
+ +S E ++L +ILS A+
Sbjct: 311 KKLKPVDSEPISPAETDVNQLPIILSDAL 339
>01_01_0225 - 1911820-1912929,1913345-1913893,1914010-1914024
Length = 557
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 486 ANTDARAWLATADICLSDREIQGSKLILILSKA 584
A TD WL D+C SD +++ L ++L +A
Sbjct: 425 ATTDLPVWLTELDVCESDVDLRADDLEVVLREA 457
>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
Length = 554
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 483 DANTDARAWLATADICLSDREIQGSKLILILSKAMKGSAATWFSQIV-FPNMKWVEFKEI 659
D +TD+ +L L + L L A+KGSA +W ++ + W + +
Sbjct: 430 DGSTDSEEFLQVYFTVLYAAGADDNALANYLPTALKGSARSWLMHLLPYSISSWADLWQQ 489
Query: 660 FISRF 674
F++ F
Sbjct: 490 FVANF 494
>09_02_0291 - 6980273-6980737,6980893-6981239,6981259-6981607
Length = 386
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 483 DANTDARAWLATADICLSDREIQGSKLILILSKAMKGSAATWFSQI-VFPNMKWVEFKEI 659
D +TD +L L + + L L A+K SA +W + + W + +
Sbjct: 243 DGSTDPEEFLQVYSTVLYAARVDDNALANYLPTALKSSARSWLMHLPPYSISSWADLWQQ 302
Query: 660 FISRF 674
FI+ F
Sbjct: 303 FIANF 307
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 28.3 bits (60), Expect = 6.2
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +3
Query: 312 EVGSVQAQNVNEQTTAND-GWRALFEAQQTSMKLLVEALTK---PPNLEDKNITLPKFQP 479
E S++A+ +E T +D RA Q+ L +T P LED L QP
Sbjct: 102 EAVSIEAEMSHEDTADDDISSRAGNLVDQSMTADLAGEVTSAAGPVRLEDLQRILSAIQP 161
Query: 480 DDANTDARAWLATADICLSD 539
DA D A L DI D
Sbjct: 162 SDAVADPDAGLGLGDILKPD 181
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 552 PVSHDPTSKCPPWPARPGRQCLHHPVE 472
PV P PP P P Q LHHP +
Sbjct: 987 PVPPTPQQPLPPPPPPPSLQQLHHPYQ 1013
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 483 DANTDARAWLATADICLSDREIQGSKLILILSKAMKGSAATWFSQI-VFPNMKWVEFKEI 659
D +TD +L L + L L A+KGSA +W + + W + +
Sbjct: 201 DGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPPYSISSWADLWQQ 260
Query: 660 FISRF 674
F++ F
Sbjct: 261 FVANF 265
>08_02_0855 -
21913291-21913347,21914117-21914211,21915077-21915165,
21915449-21915507,21917872-21918160,21918307-21918398,
21918495-21918621,21918730-21918811,21919265-21919541,
21919647-21919812,21920519-21920847
Length = 553
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +3
Query: 288 EESLSPTSEVGSVQAQNVNEQTTANDGWRALFEAQQTSMKLLVEALTKPPNLEDKNITLP 467
E+ P GSV + TTA D R + Q S + + TK +LE + T+P
Sbjct: 178 EKQFRPLLNEGSVY---LITNTTAVDARRKTYIYQHQSYMIQFKHETKVNHLESRGSTIP 234
Query: 468 KF 473
KF
Sbjct: 235 KF 236
>08_02_0821 +
21545013-21545082,21545660-21545769,21546302-21546376,
21546825-21546875
Length = 101
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 381 FEAQQTSMKLLVEALTKPPNLEDKNITLPKFQPDDANTDAR 503
F +Q K+L+ L + +D N TLP F N+D +
Sbjct: 53 FMTEQQRQKVLIHVLEEAGYTKDSNFTLPDFMKILDNSDVK 93
>07_03_1593 + 28001165-28001193,28001214-28001288,28002004-28002796
Length = 298
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -3
Query: 404 HAGLLCFK*RTPSIICRRLFVHVLCLHRSHF*CRGKALLVDIAISGCGLSGRHGVKVRA 228
HA + RT SI+C ++ H KA ++ + S G RHGV++ A
Sbjct: 155 HAARVMAPRRTGSILCTASVAGMMGGEMPHAYNVSKAAVIGVVRSAAGELARHGVRLNA 213
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +3
Query: 303 PTSEVGS---VQAQNVNEQTTANDGWRALFEAQQTSMKLLVEALTKPPNLEDKNITLPKF 473
PT V S + N N T D WR + M L+ A +I P+
Sbjct: 318 PTGNVESNPTASSNNPNNNTLLMDSWR---KNDSYQMLLIQRADNTDATCCSSSINAPQT 374
Query: 474 QPDDANTDARA 506
+ DAN +ARA
Sbjct: 375 ETSDANLEARA 385
>04_03_0888 -
20559435-20559565,20559674-20559740,20560217-20560477,
20560783-20560848,20560971-20561019,20561441-20561491,
20561568-20561620,20561743-20561794,20561867-20561955,
20562044-20562135,20562298-20562351,20563411-20563462,
20563775-20563963
Length = 401
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 372 AIHHLPSSVRSRFVPAPIPL 313
A H+ SVR RFVP P PL
Sbjct: 10 AAQHIVRSVRQRFVPLPPPL 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,719,415
Number of Sequences: 37544
Number of extensions: 436851
Number of successful extensions: 1198
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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