Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e13
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_571| Best HMM Match : Herpes_US9 (HMM E-Value=0.9)                  31   1.2  
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 30   1.6  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        29   2.7  
SB_22348| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_33338| Best HMM Match : Ank (HMM E-Value=2.4e-22)                   29   4.8  
SB_47656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17)                28   6.3  
SB_41371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024)               28   6.3  
SB_47040| Best HMM Match : PLAT (HMM E-Value=8.7e-12)                  28   6.3  
SB_21990| Best HMM Match : DUF828 (HMM E-Value=1.4)                    28   6.3  
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)            28   6.3  
SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)                     28   8.4  
SB_5895| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_54239| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)                   28   8.4  
SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)               28   8.4  

>SB_571| Best HMM Match : Herpes_US9 (HMM E-Value=0.9)
          Length = 273

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 210 GIHCVLCSHFNPMTPTKPAATNGDIDEES--LSPTSEVGSVQA 332
           GI+  L S   P TPT PA+T GD    +   +P S  G VQ+
Sbjct: 141 GIYPPLPSVCPPQTPTAPASTGGDAQTHTTPTAPASTGGDVQS 183


>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/101 (20%), Positives = 40/101 (39%)
 Frame = +3

Query: 333  QNVNEQTTANDGWRALFEAQQTSMKLLVEALTKPPNLEDKNITLPKFQPDDANTDARAWL 512
            ++   Q   N G   +F+  +T M+ + E L +  NL +K       Q DD        +
Sbjct: 890  EDFKNQVERNSG--RMFDEMKTQMEKVEEDLARSKNLREKQAKEFSRQMDDMKLKYDKQV 947

Query: 513  ATADICLSDREIQGSKLILILSKAMKGSAATWFSQIVFPNM 635
               D+C  D++++   L     +        +  Q+  P+M
Sbjct: 948  RHPDLCKYDKQVRHPDLYKYDKQVRHPDLCKYDKQVRHPDM 988


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 426 TKPPNLEDKNITLPKFQPDDANTDARAWLATADICLS 536
           T+   L   NI  P  +PDD  +D +A +   DIC+S
Sbjct: 623 TRENELVYNNIIAPPAKPDDKKSDYKATVDGLDICVS 659


>SB_22348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/82 (23%), Positives = 36/82 (43%)
 Frame = +3

Query: 291 ESLSPTSEVGSVQAQNVNEQTTANDGWRALFEAQQTSMKLLVEALTKPPNLEDKNITLPK 470
           + LS   +  S   Q  NE+  +N          +++ +   E   +  + ++++  LP+
Sbjct: 120 DKLSAIQKKDSENHQTTNEEEPSNGETETKVNENKSTEQQQAEKGERTADQDEQSNPLPE 179

Query: 471 FQPDDANTDARAWLATADICLS 536
            Q DDA +DA     T  + LS
Sbjct: 180 QQTDDAASDAIHVTLTTSVALS 201


>SB_33338| Best HMM Match : Ank (HMM E-Value=2.4e-22)
          Length = 215

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 234 HFNPMTPTKPAATNGDIDEESLSPTSEVGSVQAQNVNEQTTANDGWRALFEAQQTSMKLL 413
           +F+P      AAT+ D++E  +   S + SV A+N  E  TA     A FE   +  + L
Sbjct: 74  NFHPNVRLFYAATSDDLEEVEMLIESGMASVNARNPAEGATALHA--ACFEGNVSCARYL 131

Query: 414 VE 419
           +E
Sbjct: 132 LE 133


>SB_47656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 210 GIHCVLCSHFNPMTPTKPAATNGDI 284
           GI+  L S   P TPT PA+T GD+
Sbjct: 10  GIYPPLPSVCPPQTPTAPASTGGDV 34


>SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17)
          Length = 549

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -2

Query: 450 YPQDSVV*SKPPRVASCWFVVLQITHAIHHLPSSVRSRFVPAPIPLLMSGKGSPRRYRH 274
           Y   S +   PP +   W  V      +H   ++      P PI ++ S   SP  Y H
Sbjct: 165 YNNTSCIALTPPPIGIMWSSVTSTMEYLHLYNNTSCIALTPPPIGIMWSSVTSPMEYLH 223


>SB_41371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 210 GIHCVLCSHFNPMTPTKPAATNGDI 284
           GI+  L S   P TPT PA+T GD+
Sbjct: 10  GIYPPLPSVCPPQTPTAPASTGGDV 34


>SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024)
          Length = 693

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 554 SLYLTIRQANVRRGQPGPG--VSVCIIRLKLRQRDVFIL 444
           S Y T+R   VR  +PG G  V V +  L LR R  F+L
Sbjct: 341 SRYSTVRLYVVRNDEPGEGCLVQVRLSGLSLRSRGCFVL 379


>SB_47040| Best HMM Match : PLAT (HMM E-Value=8.7e-12)
          Length = 549

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 246 MTPTKPAATNGDIDEESLSPTSEVGSVQAQNV-NEQTTANDGW 371
           M+P++ A  +G+ D+  +S  S +GS++  NV ++ T  +  W
Sbjct: 134 MSPSRIALASGNADQFVISMASPLGSIEYLNVLHDNTGPSPAW 176


>SB_21990| Best HMM Match : DUF828 (HMM E-Value=1.4)
          Length = 415

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 210 GIHCVLCSHFNPMTPTKPAATNGDI 284
           GI+  L S   P TPT PA+T GD+
Sbjct: 218 GIYPPLPSVCPPQTPTAPASTGGDV 242


>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
          Length = 1523

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 246 MTPTKPAATNGDIDEESLSPTSEVGSVQAQNV-NEQTTANDGW 371
           M+P++ A  +G+ D+  +S  S +GS++  NV ++ T  +  W
Sbjct: 194 MSPSRIALASGNADQFVISMASPLGSIEYLNVLHDNTGPSPAW 236


>SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 210 GIHCVLCSHFNPMTPTKPAATNGDI 284
           GI+  L S   P TPT PA+T GD+
Sbjct: 218 GIYPPLPSVCPPQTPTAPASTGGDV 242


>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
          Length = 1311

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 240 NPMTPTKPAATNGDIDEESLSPTSE 314
           N  TPTK   T   I EE+++PT+E
Sbjct: 875 NLKTPTKDMDTESQITEEAVTPTNE 899


>SB_5895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = +3

Query: 243 PMTPTKPAATNGDIDEESLSPTSEVGSVQAQNVNEQTTANDGWRALF 383
           P TPT PA+T GD     L  T +  +V    +         ++  F
Sbjct: 127 PQTPTAPASTGGDAQSFRLQVTRDTQAVLDSEITHYRQVRKKYKRAF 173


>SB_54239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = -2

Query: 537 PTSKCPPWPARPGRQCL----HHPVET*AA*CF 451
           P   CPPWP R   Q L      PVE   A CF
Sbjct: 204 PRQACPPWPLRGIEQMLGIYEKPPVEVVVAHCF 236


>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
          Length = 965

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 264 AATNGDIDEESLSPTSEVGSVQAQNV-NEQTTANDGWRAL 380
           A TNG I+   +SP+S +      NV N +   NDG+  L
Sbjct: 457 AGTNGGINGHCISPSSAINIKALHNVTNTKGRCNDGYMDL 496


>SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 385 SNNARHPS-FAVVCSFTFCACTDPTSDVGERL 293
           S    +P+ F ++  F  CACT P+ D GE++
Sbjct: 695 SGQPMYPTLFLLLVQFVECACTPPSVDQGEQV 726


>SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)
          Length = 997

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = +3

Query: 291 ESLSPTSEVGSVQAQNVNEQTTANDGWRALFEAQQTSMKLLVEALTKPPNLEDKNITLPK 470
           + +S   +    +A+    Q    DG     EAQ+   K      +    L +K   L K
Sbjct: 676 QEISSQMQTEEQRAREAMSQLQIRDGGPLSLEAQEYRDKHAHNMASLGKQLLEKQTNLQK 735

Query: 471 FQPDDANTDARAW 509
            Q + A+++A+ W
Sbjct: 736 LQKERASSEAKLW 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,879,251
Number of Sequences: 59808
Number of extensions: 495981
Number of successful extensions: 1284
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)