Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2e13
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016443-11|AAC24278.2| 350|Caenorhabditis elegans Hypothetical... 33 0.15
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81140-4|CAJ55247.1| 463|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81140-3|CAJ55246.1| 453|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81130-8|CAB03416.1| 347|Caenorhabditis elegans Hypothetical pr... 28 7.4
AY455927-3|AAR26304.1| 347|Caenorhabditis elegans phosphoglucos... 28 7.4
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 9.8
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 9.8
>AF016443-11|AAC24278.2| 350|Caenorhabditis elegans Hypothetical
protein C17E7.10 protein.
Length = 350
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 390 QQTSMKLLVEALTKPPNLEDKNITLPKF-QPDDANTDARAWLATADICLSDREIQ 551
Q T K LV PNL KNIT+P+F +P+D NT + ++D C++ E++
Sbjct: 140 QVTENKKLVRL--NMPNL--KNITMPEFPKPNDKNTKLKFHSESSDFCITIEEME 190
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 408 LLVEALTKPPNLEDKNITLPKFQPDDANTDA 500
LLV A+ PNL+ LP + P+ NTDA
Sbjct: 9 LLVTAVAAAPNLDSVFHHLPNYYPELTNTDA 39
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 408 LLVEALTKPPNLEDKNITLPKFQPDDANTDA 500
LLV A+ PNL+ LP + P+ NTDA
Sbjct: 9 LLVTAVAAAPNLDSVFHHLPNYYPELTNTDA 39
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 408 LLVEALTKPPNLEDKNITLPKFQPDDANTDA 500
LLV A+ PNL+ LP + P+ NTDA
Sbjct: 9 LLVTAVAAAPNLDSVFHHLPNYYPELTNTDA 39
>Z81140-4|CAJ55247.1| 463|Caenorhabditis elegans Hypothetical
protein W10G6.2b protein.
Length = 463
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 441 LEDKNITLPKFQPDDANTDARAWLATADICLSDREIQGSK 560
L +KNI +P++ D + +L D L ++QGSK
Sbjct: 250 LHEKNIIYRDLKPENLLLDDKGYLVLTDFGLCKEDMQGSK 289
>Z81140-3|CAJ55246.1| 453|Caenorhabditis elegans Hypothetical
protein W10G6.2a protein.
Length = 453
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 441 LEDKNITLPKFQPDDANTDARAWLATADICLSDREIQGSK 560
L +KNI +P++ D + +L D L ++QGSK
Sbjct: 240 LHEKNIIYRDLKPENLLLDDKGYLVLTDFGLCKEDMQGSK 279
>Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical protein
F46C5.6 protein.
Length = 986
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 544 SRSDKQMSAVASQARASVFASSG*NLGSVMFLSSRFGGLVKASTSSFMLV-CCASNNARH 368
S S ++ S +S SSG L SS F G STSS+ L+ +S+N R
Sbjct: 898 STSSISSNSFTSPLSSSSLPSSGYGLRRSATSSSAFAGSSYTSTSSYSLMNARSSSNIRR 957
Query: 367 PSFAV 353
P + +
Sbjct: 958 PGYGL 962
>Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical protein
F46C5.6 protein.
Length = 986
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 544 SRSDKQMSAVASQARASVFASSG*NLGSVMFLSSRFGGLVKASTSSFMLV-CCASNNARH 368
S S ++ S +S SSG L SS F G STSS+ L+ +S+N R
Sbjct: 898 STSSISSNSFTSPLSSSSLPSSGYGLRRSATSSSAFAGSSYTSTSSYSLMNARSSSNIRR 957
Query: 367 PSFAV 353
P + +
Sbjct: 958 PGYGL 962
>Z81130-8|CAB03416.1| 347|Caenorhabditis elegans Hypothetical
protein T23G11.2 protein.
Length = 347
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 304 GERLSSSISPLVA--AGLVGVMGLKCEHKTQWMPFYQ*FNFS 185
G++L + ++ ++ A +GV L E KT+ +PFY F +S
Sbjct: 111 GKKLGALLNEVLVEMAKTIGVYKLSLECKTELIPFYNKFGYS 152
>AY455927-3|AAR26304.1| 347|Caenorhabditis elegans
phosphoglucosamine acetyltransferaseprotein.
Length = 347
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 304 GERLSSSISPLVA--AGLVGVMGLKCEHKTQWMPFYQ*FNFS 185
G++L + ++ ++ A +GV L E KT+ +PFY F +S
Sbjct: 111 GKKLGALLNEVLVEMAKTIGVYKLSLECKTELIPFYNKFGYS 152
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 447 DKNITLPKFQPDDANTDARAWLATADIC--LSDREIQGSKLILILSKAMKGSA 599
DKN K +P +AN + W+ D+ ++ R+I +++ +S++ +G A
Sbjct: 818 DKNKVPRKRRPIEANVINKLWMIALDMSHGINSRKIDALRILYPISRSERGIA 870
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 447 DKNITLPKFQPDDANTDARAWLATADIC--LSDREIQGSKLILILSKAMKGSA 599
DKN K +P +AN + W+ D+ ++ R+I +++ +S++ +G A
Sbjct: 774 DKNKVPRKRRPIEANVINKLWMIALDMSHGINSRKIDALRILYPISRSERGIA 826
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,956,587
Number of Sequences: 27780
Number of extensions: 373586
Number of successful extensions: 986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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