Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2e07
(707 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 25 0.70
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 24 1.2
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 24 1.2
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 24 1.2
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 24 1.2
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 24 1.2
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 24 1.2
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 24 1.2
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 24 1.2
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 24 1.2
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 24 1.2
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 24 1.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 3.7
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 5.0
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 5.0
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 8.7
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 8.7
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 25.0 bits (52), Expect = 0.70
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -3
Query: 120 NKSIVVLIRFNPIFISKFAQQRKKNVKKIYCFLFIINK 7
NKS+ V+ ++ + + + A K+++ + L+ INK
Sbjct: 50 NKSLPVIEIWDQMTVKELANSAKRDINDVLNVLYFINK 87
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 94 YNNNYNNYNKHNYNKLYYNINYI 116
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 94 YNNNYNNYNKHNYNKLYYNINYI 116
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 94 YNNNYNNYNKHNYNKLYYNINYI 116
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 94 YNNNYNNYNKHNYNKLYYNINYI 116
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 94 YNNNYNNYNKHNYNKLYYNINYI 116
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 94 YNNNYNNYNKHNYNKLYYNINYI 116
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 94 YNNNYNNYNKHNYNKLYYNINYI 116
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 94 YNNNYNNYNKHNYNKLYYNINYI 116
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 94 YNNNYNNYNKHNYNKLYYNINYI 116
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 327 YNNNYNNYNKHNYNKLYYNINYI 349
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 YNDRFIE-NKHNLIKLYFYIAFI 168
YN+ + NKHN KLY+ I +I
Sbjct: 327 YNNNYNNYNKHNYNKLYYNINYI 349
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 598 KSITNSLLMGFEATVN*LVTQEKTTKSLLLQI 503
K IT ++G + QEK++KSLL +
Sbjct: 314 KKITKKTILGGNRRAKGMELQEKSSKSLLANV 345
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 598 KSITNSLLMGFEATVN*LVTQEKTTKSLLLQI 503
K IT ++G + QEK++KSLL +
Sbjct: 314 KKITKKTILGGNRRAKGMELQEKSSKSLLANV 345
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 598 KSITNSLLMGFEATVN*LVTQEKTTKSLLLQI 503
K IT ++G + QEK++KSLL +
Sbjct: 314 KKITKKTILGGNRRAKGMELQEKSSKSLLANV 345
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 598 KSITNSLLMGFEATVN*LVTQEKTTKSLLLQI 503
K IT ++G + QEK++KSLL +
Sbjct: 314 KKITKKTILGGNRRAKGMELQEKSSKSLLANV 345
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 598 KSITNSLLMGFEATVN*LVTQEKTTKSLLLQI 503
K IT ++G + QEK++KSLL +
Sbjct: 314 KKITKKTILGGNRRAKGMELQEKSSKSLLANV 345
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 598 KSITNSLLMGFEATVN*LVTQEKTTKSLLLQI 503
K IT ++G + QEK++KSLL +
Sbjct: 314 KKITKKTILGGNRRAKGMELQEKSSKSLLANV 345
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 598 KSITNSLLMGFEATVN*LVTQEKTTKSLLLQI 503
K IT ++G + QEK++KSLL +
Sbjct: 382 KKITKKTILGGNRRAKGMELQEKSSKSLLANV 413
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 598 KSITNSLLMGFEATVN*LVTQEKTTKSLLLQI 503
K IT ++G + QEK++KSLL +
Sbjct: 382 KKITKKTILGGNRRAKGMELQEKSSKSLLANV 413
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 22.6 bits (46), Expect = 3.7
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 77 YQNLHNKEKKMLRK 36
Y+ LHN++KK+L +
Sbjct: 252 YEKLHNEKKKLLEE 265
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 88 IETDQYNDRFIENKHNLIKLYFYIAFILCISV 183
I ++ YN + N +N KLY+ I I I V
Sbjct: 304 ISSNNYNYKNYNNNYNSKKLYYNIINIEQIPV 335
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 88 IETDQYNDRFIENKHNLIKLYFYIAFILCISV 183
I ++ YN + N +N KLY+ I I I V
Sbjct: 315 ISSNNYNYKNYNNNYNSKKLYYNIINIEQIPV 346
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 8.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 633 IFVFHANRFIILKVLQIHY*WGS 565
+F F+ +F+ +K L Y W S
Sbjct: 506 VFTFNIIKFVPVKYLTYEYPWWS 528
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 8.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 633 IFVFHANRFIILKVLQIHY*WGS 565
+F F+ +F+ +K L Y W S
Sbjct: 559 VFTFNIIKFVPVKYLTYEYPWWS 581
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,055
Number of Sequences: 438
Number of extensions: 3028
Number of successful extensions: 25
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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