Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2e04
(736 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 326 3e-88
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 164 2e-39
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 163 3e-39
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 159 5e-38
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 157 3e-37
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 153 6e-36
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 152 7e-36
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 148 2e-34
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 138 1e-31
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 134 3e-30
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 133 5e-30
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 132 9e-30
UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physali... 124 2e-27
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 123 5e-27
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 117 3e-25
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 76 1e-12
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 60 7e-08
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 50 6e-05
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 43 0.007
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 42 0.012
UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep: Rep... 42 0.016
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 41 0.027
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 40 0.048
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 37 0.59
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 36 1.0
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 36 1.0
UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic v... 36 1.4
UniRef50_A4E4Z5 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 33 5.5
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 33 5.5
UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4; ... 33 7.3
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 33 9.6
UniRef50_A6F1T3 Cluster: Chemotaxis protein histidine kinase and... 33 9.6
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 326 bits (802), Expect = 3e-88
Identities = 156/184 (84%), Positives = 156/184 (84%)
Frame = +1
Query: 1 TVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXX 180
TVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPR
Sbjct: 1564 TVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRALL 1623
Query: 181 XXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQ 360
DDRTLPDKIASYLSEFVVGHSLGD FWTLLPADQVIYQSALFDFFCRECSKEQ
Sbjct: 1624 AKLVLALDDRTLPDKIASYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQ 1683
Query: 361 KLALKIGEVPELLCQTMLSLGFSWLSRPLYXXXXXXXXXXXXXXXXFAPLFSDPSVEGVL 540
KLALKIGEVPE LCQTMLSLGFSWLSRPLY FAPLFSDPSVEGVL
Sbjct: 1684 KLALKIGEVPEHLCQTMLSLGFSWLSRPLYALLDRTARLRLLARTRFAPLFSDPSVEGVL 1743
Query: 541 QLDF 552
QLDF
Sbjct: 1744 QLDF 1747
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 164 bits (399), Expect = 2e-39
Identities = 81/175 (46%), Positives = 103/175 (58%)
Frame = +1
Query: 4 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 183
+ VSGDDS++ P +W A+ LL+L FK E ++ LFCGYY+GPAGAIR+P
Sbjct: 1591 IMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPAGAIRSPITLFA 1650
Query: 184 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQK 363
DD ++ DK+ASYLSEF +GHSLG FW LLP DQV YQSA++DFFCR S+EQK
Sbjct: 1651 KIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYDFFCRHASREQK 1710
Query: 364 LALKIGEVPELLCQTMLSLGFSWLSRPLYXXXXXXXXXXXXXXXXFAPLFSDPSV 528
L IGEVP+ + ++ S + SR LY F DP V
Sbjct: 1711 QILNIGEVPDTVLSSIAS-HLRFASRALYCLLPSSVRRALTSKKTVTDAFEDPDV 1764
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 163 bits (397), Expect = 3e-39
Identities = 80/145 (55%), Positives = 94/145 (64%)
Frame = +1
Query: 4 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 183
V +SGDD +SPPPP P W + +LSL FK E R GLFCGYYLGPAGA+R+P
Sbjct: 160 VLISGDDLDISPPPPVRPTWPILEAMLSLRFKTEVSRYGLFCGYYLGPAGAVRSPLALFA 219
Query: 184 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQK 363
DD ++ DK ASYLSEF VGHSLG WTLLP +QV YQSA FDFFCR C K
Sbjct: 220 KLIIAVDDGSIEDKKASYLSEFAVGHSLGQDMWTLLPENQVPYQSANFDFFCRNCPPSWK 279
Query: 364 LALKIGEVPELLCQTMLSLGFSWLS 438
LAL+IG P+L L+L + L+
Sbjct: 280 LALRIGS-PDLSFLDSLNLATTHLT 303
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 159 bits (387), Expect = 5e-38
Identities = 77/149 (51%), Positives = 100/149 (67%)
Frame = +1
Query: 4 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 183
V VSGDDSLV PP +P W A++PL +L K E GLFCGY++GPAGA+RAPR
Sbjct: 1769 VLVSGDDSLVDRVPPMNPSWPALAPLFALKPKPETSPFGLFCGYFVGPAGAVRAPRALFA 1828
Query: 184 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQK 363
+D +LP+KIASY++EF VG SLGD W+L+P + VIYQSA FD CR S + K
Sbjct: 1829 KLAIALEDGSLPEKIASYVAEFSVGQSLGDSLWSLIPPELVIYQSACFDLICRHASPQLK 1888
Query: 364 LALKIGEVPELLCQTMLSLGFSWLSRPLY 450
LAL++GEVP+ + L +L+RPL+
Sbjct: 1889 LALRLGEVPD-WGSLLSQLKLRFLTRPLF 1916
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 157 bits (381), Expect = 3e-37
Identities = 71/149 (47%), Positives = 92/149 (61%)
Frame = +1
Query: 4 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 183
+ VSGDDSL+ PP W A++P+L+LTFKKE R FCGYY+G GA+R+P
Sbjct: 1594 LMVSGDDSLLDSEPPVRDQWSAIAPMLALTFKKERGRYATFCGYYVGFTGAVRSPPALFA 1653
Query: 184 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQK 363
DD ++ DK+ +YL+EF VGHS GD FWT+LP + V YQSA FDFFCR + K
Sbjct: 1654 KLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFDFFCRRAPAQAK 1713
Query: 364 LALKIGEVPELLCQTMLSLGFSWLSRPLY 450
+ L++GE PE L G W S +Y
Sbjct: 1714 VMLRLGEAPESLLSLAFE-GLKWASHSVY 1741
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 153 bits (370), Expect = 6e-36
Identities = 73/147 (49%), Positives = 91/147 (61%)
Frame = +1
Query: 10 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 189
VSGDDSL+ PP P+W A+ PLL+L FKKE FCGYY G +R+P
Sbjct: 1637 VSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIALFAKL 1696
Query: 190 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQKLA 369
DD ++ DK+A+YL EF VGHSLGD W+ LP V +QSA FDFFCR ++ KLA
Sbjct: 1697 AIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRDLKLA 1756
Query: 370 LKIGEVPELLCQTMLSLGFSWLSRPLY 450
L +GEVPE + Q + L SWLS +Y
Sbjct: 1757 LHLGEVPETIIQRLSHL--SWLSHAVY 1781
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 152 bits (369), Expect = 7e-36
Identities = 74/147 (50%), Positives = 92/147 (62%)
Frame = +1
Query: 10 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 189
VSGDDSL+ PP +P W AV PLL+L FKKE R G FCGYY+G G IR+P
Sbjct: 1669 VSGDDSLLGREPPRNPIWQAVKPLLALRFKKERTRYGEFCGYYVGCEGCIRSPMALFAKL 1728
Query: 190 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQKLA 369
DD T+ +K+ SY +EF +GHSLGD FW LLP D V +QSA+FDFFCR ++ K+
Sbjct: 1729 MVCVDDGTIEEKMISYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFDFFCRHAPEDVKVM 1788
Query: 370 LKIGEVPELLCQTMLSLGFSWLSRPLY 450
K+G V L +LS +WLS Y
Sbjct: 1789 FKLGRVEVSLFSHLLS-KLTWLSYSSY 1814
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 148 bits (358), Expect = 2e-34
Identities = 70/147 (47%), Positives = 87/147 (59%)
Frame = +1
Query: 10 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 189
VSGDDSL+ PP P+W + PLLSL FKKE R FCGYY G +R+P
Sbjct: 1775 VSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHVGCVRSPVALFAKL 1834
Query: 190 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQKLA 369
DD ++ DK+ASYLSEF +GHSLGD W LP + V +QSA FDFFCR + KL+
Sbjct: 1835 AIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFDFFCRRAPRHLKLS 1894
Query: 370 LKIGEVPELLCQTMLSLGFSWLSRPLY 450
L +GEVPE + + W S +Y
Sbjct: 1895 LMLGEVPESII-ARIGSSLKWASHAIY 1920
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 138 bits (335), Expect = 1e-31
Identities = 68/176 (38%), Positives = 95/176 (53%)
Frame = +1
Query: 10 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 189
VSGDDS+V+ PP +P W+A+ LL L FK LFCGYY+ P GA+R P
Sbjct: 1559 VSGDDSVVAGQPPVNPAWNAIKNLLHLKFKTHCSAYPLFCGYYVSPVGAVRNPHALFAKL 1618
Query: 190 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQKLA 369
DD ++P+K SYLSEF VGHS+G FW+ +P YQ+A+++FFCR CS+ +KL
Sbjct: 1619 MIAHDDGSIPEKKLSYLSEFSVGHSIGHEFWSAIPDSIHCYQAAVYNFFCRHCSRSEKLL 1678
Query: 370 LKIGEVPELLCQTMLSLGFSWLSRPLYXXXXXXXXXXXXXXXXFAPLFSDPSVEGV 537
L + + E + LS W+S+ L+ + DPSV +
Sbjct: 1679 LTLDSIDESHLE-KLSYKVKWVSKTLFSMLPQKARDHFISASKISSFPDDPSVSSL 1733
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 134 bits (323), Expect = 3e-30
Identities = 67/146 (45%), Positives = 81/146 (55%)
Frame = +1
Query: 4 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 183
V VSGDDSL+ PP W+A LL L FK E + LFCGYY G AGAIR P
Sbjct: 1688 VMVSGDDSLIDRQPPLAQSWEATKRLLHLRFKTEKTTHPLFCGYYTGSAGAIRNPLALFS 1747
Query: 184 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQK 363
DD + D+ SYL+EF GH LGD WTLLP IYQSA FD+FCR +K
Sbjct: 1748 KLMIAIDDEAIHDRRLSYLTEFSTGHQLGDALWTLLPESTQIYQSACFDYFCRHSPPHEK 1807
Query: 364 LALKIGEVPELLCQTMLSLGFSWLSR 441
L E+P+ + + +S WLS+
Sbjct: 1808 ALLSSFELPDSVI-SKISSSTKWLSK 1832
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 133 bits (321), Expect = 5e-30
Identities = 66/147 (44%), Positives = 87/147 (59%)
Frame = +1
Query: 10 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 189
VSGDDS +S +W V LL L K + +GLFCGYYLGP G IR P
Sbjct: 1563 VSGDDSYLSGTLSPRSNWPFVKELLHLRLKPSSLIDGLFCGYYLGPQGCIRNPLALFAKL 1622
Query: 190 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQKLA 369
DD + DK+ SYL+EF +GH LGD W LLP+D V+YQSA FD+FCR+ ++ QK+
Sbjct: 1623 MIAEDDGSAFDKLPSYLTEFSIGHGLGDSLWQLLPSDLVLYQSACFDYFCRKATRSQKIL 1682
Query: 370 LKIGEVPELLCQTMLSLGFSWLSRPLY 450
L+ G V + ++L ++SRP Y
Sbjct: 1683 LQPGLVDQETLD-KIALSAKFISRPFY 1708
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 132 bits (319), Expect = 9e-30
Identities = 65/146 (44%), Positives = 80/146 (54%)
Frame = +1
Query: 4 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 183
+ VSGDDSL+ P P DW +V L L FK E + LFCGYY+GPAG IR P
Sbjct: 1659 IMVSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHPLFCGYYVGPAGCIRNPLALFC 1718
Query: 184 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQK 363
DD L D+ SYL+EF GH LG+ W LLP V YQSA FDFFCR C + +K
Sbjct: 1719 KLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQYQSACFDFFCRRCPRHEK 1778
Query: 364 LALKIGEVPELLCQTMLSLGFSWLSR 441
+ L P L ++ WL++
Sbjct: 1779 MLLD-DSTPALSLLERITSSPRWLTK 1803
>UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physalis
mottle virus|Rep: RNA replicase polyprotein - Physalis
mottle virus (PhMV) (Belladonna mottle virus-Iowa)
Length = 178
Score = 124 bits (300), Expect = 2e-27
Identities = 58/117 (49%), Positives = 69/117 (58%)
Frame = +1
Query: 43 PPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPD 222
PP P+W A+ LL L FK E + LFCGYYL PAG IR P DD +LP+
Sbjct: 6 PPISPNWPAIKDLLHLKFKTEITSSPLFCGYYLSPAGCIRNPLAHFAKLMTCVDDMSLPE 65
Query: 223 KIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPE 393
K+ SYLSE +GH+LGD LP + YQSA FDFFCR C+ QKL L +PE
Sbjct: 66 KVLSYLSEVSIGHNLGDQIIQHLPPHLIQYQSACFDFFCRNCTPSQKLLLSNDPIPE 122
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 123 bits (296), Expect = 5e-27
Identities = 64/175 (36%), Positives = 88/175 (50%)
Frame = +1
Query: 4 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 183
+ +SGDDS++ PP P W + +L L FK E + LFCGYY+ P GA R P
Sbjct: 1654 ILISGDDSVLCGTPPPSPLWPTLKKMLHLRFKIERTSHPLFCGYYVSPHGAARNPYALFA 1713
Query: 184 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQK 363
DD++L DK SYLSEF GH GD ++LP+ + YQSA+ DFFCR C+ +K
Sbjct: 1714 KLMICVDDKSLHDKKLSYLSEFSTGHLAGDLVTSILPSHLLPYQSAVHDFFCRNCTPAEK 1773
Query: 364 LALKIGEVPELLCQTMLSLGFSWLSRPLYXXXXXXXXXXXXXXXXFAPLFSDPSV 528
+ L + +PE L L W S+ + L+S+P V
Sbjct: 1774 ILLSLDPIPESKI-LQLILKVRWASQAFFSYLPQKARELLVARSSLPSLYSNPKV 1827
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 117 bits (281), Expect = 3e-25
Identities = 60/149 (40%), Positives = 78/149 (52%)
Frame = +1
Query: 4 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 183
+ VSGDDS++ PP +P+W AV LL L FK E LFCGYY+GP G R P
Sbjct: 1584 IMVSGDDSVICGHPPINPNWPAVEKLLHLRFKTEETSLPLFCGYYVGPTGCCRNPFALFA 1643
Query: 184 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQK 363
D L + + SYL EF +GH LGD L P + Y SA +D FCR+C+ QK
Sbjct: 1644 KLMISYDKGNLFETLPSYLYEFSIGHRLGDVVRLLFPDHLLKYYSACWDLFCRKCTASQK 1703
Query: 364 LALKIGEVPELLCQTMLSLGFSWLSRPLY 450
L L +P + S W+S+ L+
Sbjct: 1704 LILSFEPIPPSFFSKLASTS-RWVSKVLF 1731
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 75.8 bits (178), Expect = 1e-12
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = +2
Query: 566 MEEIVPLVVSAASAIPSLVDAFSSSKPPQTDTPPARSMDM 685
MEEIVPLVVSAASAIPSLV+AFSSSKPPQTD P ARSMDM
Sbjct: 1 MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDM 40
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 59.7 bits (138), Expect = 7e-08
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Frame = +1
Query: 13 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 192
SGDD + P P W ++S SL K FCG+ L G IR P
Sbjct: 1414 SGDDMFILCVPTISPGWLSISRYFSLVGKPVITFLPEFCGWLLTSHGIIRHPYLLYAKYL 1473
Query: 193 XXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQKLAL 372
++ TL + + SY EF +LGD W LP D + YQ L F + S+ +
Sbjct: 1474 FHKENGTLANVLISYYMEFQHSLTLGDALWESLPYDLLPYQGQLQLLFNQARSRVPSFLI 1533
Query: 373 ---KIGEVP 390
K+G+ P
Sbjct: 1534 RENKLGDAP 1542
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 50.0 bits (114), Expect = 6e-05
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +1
Query: 85 SLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHS 264
SLT +E + +FCG+YL P G I++P+ + + L + + +YL E + +
Sbjct: 1476 SLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYR 1535
Query: 265 LGDPFWTLLPADQVIYQSALFDFFCR 342
LG+ +T+L + Y + FF +
Sbjct: 1536 LGERLYTILKEEDFEYHYLVIRFFVK 1561
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 43.2 bits (97), Expect = 0.007
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = +1
Query: 13 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXX 177
+GDDS + P P + +SP LSL K + FCG+ + P G I+ P
Sbjct: 1528 AGDDSACAAPLSEKPSFQHISPELSLKSKAKIRSQTKGDYATFCGWLITPKGFIKNPTQL 1587
Query: 178 XXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSAL 324
++ L D +Y + + + L D + LL +++ + L
Sbjct: 1588 YASWLLAKHNKDLQDVARNYALDLRIAYQLKDELYELLSPEELDHHQLL 1636
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 42.3 bits (95), Expect = 0.012
Identities = 27/87 (31%), Positives = 39/87 (44%)
Frame = +1
Query: 82 LSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGH 261
LSL K + +FCG+ L G I+ P ++ L D I SY EF +
Sbjct: 1748 LSLKAKVNRTKVPMFCGWRLCFDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAY 1807
Query: 262 SLGDPFWTLLPADQVIYQSALFDFFCR 342
LG+ ++ L +Q+ Y L FF R
Sbjct: 1808 KLGERLYSHLEIEQLNYHQVLTRFFIR 1834
>UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep:
Replicase - Potato virus T
Length = 248
Score = 41.9 bits (94), Expect = 0.016
Identities = 22/90 (24%), Positives = 37/90 (41%)
Frame = +1
Query: 13 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 192
+GDD S D + + L+L K +F +FCG+Y+ G ++ PR
Sbjct: 95 AGDDMYASGKLEIRKDREDLLAHLTLKAKVQFTEKPMFCGWYIKKMGIVKEPRLVLERWL 154
Query: 193 XXXDDRTLPDKIASYLSEFVVGHSLGDPFW 282
+ + +Y E G+ LG+ W
Sbjct: 155 IAERKKVIDQCFINYSIEVSYGYRLGEYLW 184
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 41.1 bits (92), Expect = 0.027
Identities = 25/103 (24%), Positives = 41/103 (39%)
Frame = +1
Query: 13 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 192
+GDD P W +S +L K R FCG+ L G ++ P+
Sbjct: 1233 AGDDLARDRNCPERASWKYISHQFTLQAKPLVTRKPDFCGWSLTKHGIVKNPKQLWQSMQ 1292
Query: 193 XXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSA 321
L D + SY +F ++LGD + + +++ Y A
Sbjct: 1293 LGLKLDKLKDIVPSYSLDFHHAYALGDKVYDIFTEEEMAYHQA 1335
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 40.3 bits (90), Expect = 0.048
Identities = 24/110 (21%), Positives = 47/110 (42%)
Frame = +1
Query: 13 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 192
+GDD + P + ++ ++ SL K +F R+ FCG+ L G ++ P
Sbjct: 1508 AGDDMCANVRLPENHEYSSLLKKFSLKAKVDFTRSPTFCGWNLSRYGIVKKPELIAARLA 1567
Query: 193 XXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 342
+ + SY E + ++ GD + +L ++ + L FF +
Sbjct: 1568 VARQKGEVNLVLDSYFLEHLYAYNKGDHLFEILSEKELEHHYNLTRFFVK 1617
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 36.7 bits (81), Expect = 0.59
Identities = 22/98 (22%), Positives = 38/98 (38%)
Frame = +1
Query: 13 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 192
+GDD + P W PL SL K FCG+ L G +++P
Sbjct: 1347 AGDDLVRDKACDERPGWKYSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQ 1406
Query: 193 XXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 306
+ + SY +++ + LGD + + D++
Sbjct: 1407 LALRLGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDEL 1444
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 35.9 bits (79), Expect = 1.0
Identities = 22/90 (24%), Positives = 34/90 (37%)
Frame = +1
Query: 4 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 183
V +GDD S + D L L K +F FCG+ L P G + P+
Sbjct: 1862 VCFAGDDMCASKHLRVQSEHDKFLDKLKLKAKVQFTEKPTFCGWNLCPDGIYKKPQLVLE 1921
Query: 184 XXXXXXDDRTLPDKIASYLSEFVVGHSLGD 273
+ L + I +Y E + +G+
Sbjct: 1922 RMCIARETNNLANCIDNYAIEVAFAYKMGE 1951
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 35.9 bits (79), Expect = 1.0
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = +1
Query: 13 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 192
+GDD D++ V L L K + + LFCG+ + P G ++ P
Sbjct: 350 AGDDMYAPGVLQVKSDYEHVLKELQLKAKVQVSTSPLFCGWRMTPYGIVKDPNLLLDRWK 409
Query: 193 XXXDDRTLPDKIASYLSEFVVGHSLGD 273
D L + +Y E V G+ LG+
Sbjct: 410 MAKRDGKLDLCMINYALEAVYGYRLGE 436
>UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic
virus|Rep: 27 kDa protein - White ash mosaic virus
Length = 243
Score = 35.5 bits (78), Expect = 1.4
Identities = 21/98 (21%), Positives = 35/98 (35%)
Frame = +1
Query: 13 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 192
+GDD W ++P LT K FCG+ + G ++ PR
Sbjct: 82 AGDDLAREECAEERSSWAYLNPSFKLTAKPIETTRPDFCGWRITKEGIVKQPRQLYQSLV 141
Query: 193 XXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 306
+ I SY +F + +GD + + D +
Sbjct: 142 LGFLRGNIASMIPSYKIDFTYAYKMGDKLFEIFDEDDL 179
>UniRef50_A4E4Z5 Cluster: Putative uncharacterized protein; n=1;
Listeria monocytogenes HPB2262|Rep: Putative
uncharacterized protein - Listeria monocytogenes HPB2262
Length = 225
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 533 VFCNWISDDLFMEEIVPLVVSAASAIPSLVDAFSSSKP 646
++C+++++D F+EEI+P + A S I ++ F S P
Sbjct: 57 IYCDYVNNDRFLEEIIPYI--ATSKIDGVIPGFEYSVP 92
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 33.5 bits (73), Expect = 5.5
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Frame = +1
Query: 7 FVSGDDSLVSPPPPAHPDWDAVSPLLSLTFK-----KEFVRNGLFCGYYLGPAGAIRAPR 171
F +GDDS P + A+S +SLT K ++ + FCG+ + P G I+ P
Sbjct: 1380 FFAGDDSAQDCPAVEKSSFQAISGRMSLTSKPVSYAQKPGKFAEFCGWSITPLGVIKDPL 1439
Query: 172 XXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQ-VIYQSAL 324
+ SY + + LGD +L +Q V++Q +
Sbjct: 1440 KLYASLELACRTDNKENVAQSYALDAKHAYQLGDALHDILTPEQFVMHQKTI 1491
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 33.5 bits (73), Expect = 5.5
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Frame = +1
Query: 13 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXX 177
+GDDS + P P + + L+L K + FCG+ + P G I+ P+
Sbjct: 1415 AGDDSAIDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKL 1474
Query: 178 XXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIY 312
+ + + SY + + + D LL +++ Y
Sbjct: 1475 HASWMLEKKKGNVKNVLRSYELDLALAYQHKDSLHELLSEEELKY 1519
>UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 824
Score = 33.1 bits (72), Expect = 7.3
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 19 DDSLVSPPPPAHPDWDAVSPLLSLTFK 99
D S++ PPPPA P +++P+++ TF+
Sbjct: 514 DASMMPPPPPAQPKGPSLNPIITTTFR 540
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 32.7 bits (71), Expect = 9.6
Identities = 19/91 (20%), Positives = 38/91 (41%)
Frame = +1
Query: 1 TVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXX 180
++ +GDD + D++ V ++L K ++ FCG+ LG G ++ P+
Sbjct: 1898 SICFAGDDMCANKLLRKKGDFEHVLNRMTLKAKVQYTTEPTFCGWRLGSFGIVKRPQLVQ 1957
Query: 181 XXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 273
+ + I +Y E + LG+
Sbjct: 1958 ERILIALEKGNFIECIDNYAIEVSYAYKLGE 1988
>UniRef50_A6F1T3 Cluster: Chemotaxis protein histidine kinase and
related kinase; n=1; Marinobacter algicola DG893|Rep:
Chemotaxis protein histidine kinase and related kinase -
Marinobacter algicola DG893
Length = 2501
Score = 32.7 bits (71), Expect = 9.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 548 ISDDLFM-EEIVPLVVSAASAIPSLVDAFSSSKPPQTDT 661
I +FM ++I L+ +A+P LVD F +PP DT
Sbjct: 848 IDGSIFMNDDIAALLEDVTAALPELVDDFEKRQPPSRDT 886
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,243,569
Number of Sequences: 1657284
Number of extensions: 14276996
Number of successful extensions: 44698
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 42511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44658
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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