Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2e04
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    29   0.91 
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.2  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   2.1  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   2.8  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   4.8  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   4.8  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    26   4.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.5  

>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 593 SAASAIPSLVDAFSSSKPPQTDTPP 667
           S  S+ PSL  +  +S PP T TPP
Sbjct: 158 STVSSTPSLNHSLQNSMPPSTPTPP 182


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 366 RPQNRRSARTSLSDNAFPRFLLVITPP 446
           RPQ +RS+   LS +AF +F+   +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 411 HCLTKKFGH--FSYFEGEFLFLGTFTAKEIKKRAL 313
           + L    GH   S+  GE  F GT+ A+E K RAL
Sbjct: 319 YMLAASLGHDRSSFLVGEAFFYGTYGARENKLRAL 353


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 557 DLFMEEIVPLVVSAASAIPSLVDAFSSSKPPQTD 658
           D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 647 GVWKKRKHRPRREWPKRQKRLKAQF 573
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 668 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQFLP*IGHQKSSCKTPSTEGSE 513
           +A  + +  WKK +   + EW K ++  KA++       K+  K    E  E
Sbjct: 134 KAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKE 185



 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 668 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 573
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 123 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 154


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 355 PWNIHGKRNQKARSGKSLD-LLARESRKGRRE 263
           PW +  K   K R GK+++ LL R+  +G+ +
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKEK 317


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 599 ASAIPSLVDAFSSSKPPQTDTPPARSMD 682
           A+  P++V  F +   PQ D PP R+++
Sbjct: 211 ATGYPAIVVPFLNGSLPQADLPPLRTIE 238


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 10  VSGDDSLVSPPPPAHPDWDAVSPLLSL 90
           VS  +S+VSPPP   P   A +P  SL
Sbjct: 158 VSAPNSMVSPPPSFQPP-SAAAPATSL 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,582
Number of Sequences: 5004
Number of extensions: 56344
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)