Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2d16
(770 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 31 1.4
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) 30 1.8
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 30 1.8
SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 29 3.1
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40) 29 5.5
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) 29 5.5
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 5.5
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7) 28 7.3
SB_59798| Best HMM Match : Somatomedin_B (HMM E-Value=5.2) 28 7.3
SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4) 28 7.3
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0) 28 9.6
SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 302 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 403
+PV +++ + K NN KY L WY+K++
Sbjct: 7 LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40
>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
Length = 782
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 9 DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 185
D+ S RK C + +++ I+++ Q+ R +K+ K+ + TC +LR CA
Sbjct: 63 DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 122
Query: 186 MKS 194
++S
Sbjct: 123 VRS 125
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 9 DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 185
D+ S RK C + +++ I+++ Q+ R +K+ K+ + TC +LR CA
Sbjct: 830 DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 889
Query: 186 MKS 194
++S
Sbjct: 890 VRS 892
>SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 266 LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKY---ILFNSWYTKIKQPEWPSSPAMW 436
+E K + Y V +DE K+ RK+ + +Y ILFN++ ++ +W S + W
Sbjct: 26 IEAKTMKYKYGCSDVPRDE-KLDLRKRSLYYLERYFYFILFNTYLNMERRSKWDRSFSQW 84
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +2
Query: 152 QSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKM 331
+ S+E + C ++++E N ++ ++V+F+++ NI L P+ QDE +
Sbjct: 191 EKSSEISLECPEILNVDEIEDEPIN-----EISSLVDFVDE-NIEKSLLKDPLWQDEEEK 244
Query: 332 SKRKKK 349
KRKKK
Sbjct: 245 GKRKKK 250
>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
Length = 595
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +2
Query: 86 SRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNF 265
S Q G KG ++ + S T + KN + ESS++ +S D L+A ++
Sbjct: 343 SHEQHGELKGSGETVFYSPRAHASDTPSKKPTKNLTM----ESSTFKESEKDVLMASLDI 398
Query: 266 LEKKNINYIL 295
+KK++N ++
Sbjct: 399 KDKKHVNTLV 408
>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
Length = 710
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 214 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 131
RF Q I+AH SF +R+LLR + H
Sbjct: 22 RFPRNPQKLIYAHQNSFKKRILLRRIEH 49
>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 368
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 388 PTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLF 272
P N+ +++ +L A + + HDR + E N+LF
Sbjct: 313 PREVHNILLLMGYLNSALNPYMYSFHDRQFKEAFKNILF 351
>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
Length = 504
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 505 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 383
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 395 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 434
>SB_59798| Best HMM Match : Somatomedin_B (HMM E-Value=5.2)
Length = 198
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +2
Query: 437 DLVKNTPELADFVFIFDHTEKMGKKMADRXXXXXXXDNAAIPASKKRQTAVLTNANLAEL 616
DL+++TPE+A+F F + GKK D +A R A ++ +E+
Sbjct: 66 DLIEHTPEVAEF-FSPQFLVRSGKKSEDHSKEVHEVGSAMSLGKCTRDRA---DSGFSEI 121
Query: 617 KESCEMRDKLYS 652
C R L+S
Sbjct: 122 PSPCSSRCSLFS 133
>SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 505 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 383
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 240 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 279
>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 505 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 383
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 289 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 328
>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
Length = 254
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 505 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 383
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 198 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 237
>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1250
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 641 KLYSEFYSLLNETFN--NNVAPLLSSIYDEVLTRDFI 745
KLY EF L E+FN +N+ ++ DE + +D++
Sbjct: 336 KLYPEFIKLAKESFNTIDNLTSCKNASQDESIRQDYV 372
>SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSS---YNKSNMDQLIAIVNFLEKKNINYILNVMPV 310
+P S + T K EKL +K + S NK++M +N K+I + ++
Sbjct: 576 LPAYGSKSNTIKAFK-EKLFSKKSTDSTKAVNKTSMSPNFVYLNSCYSKSIEVLPSIYAT 634
Query: 311 MQDERKMSKRKKK 349
+ E+K R++K
Sbjct: 635 VDKEKKKRDRERK 647
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,079,879
Number of Sequences: 59808
Number of extensions: 534007
Number of successful extensions: 1371
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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