Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d15
         (1005 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         24   8.2  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         24   8.2  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    24   8.2  

>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 223 HRHEHVLPFHNLHILNCGQCPWPQ 152
           H H H LP H  H  +  Q P PQ
Sbjct: 97  HPHHHQLPHHPHHQHHPQQQPSPQ 120


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 223 HRHEHVLPFHNLHILNCGQCPWPQ 152
           H H H LP H  H  +  Q P PQ
Sbjct: 97  HPHHHQLPHHPHHQHHPQQQPSPQ 120


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 144 RLLVAEHVSERELVLAEFELPDFNLSHF 61
           RLL  E VS+ E  L  FE+P   + +F
Sbjct: 380 RLLTYEKVSDSEADLGAFEMPATVVENF 407


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 857,122
Number of Sequences: 2352
Number of extensions: 18270
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 110585631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)