Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d13
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   1.8  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       24   3.1  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    23   4.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    23   4.1  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    23   4.1  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    23   4.1  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    22   9.4  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 239 FFFTKCANMTLLFVYNKNFE 180
           F FTK    ++LF  +KNFE
Sbjct: 3   FTFTKSDGSSILFAVSKNFE 22


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 133 NLPMFKLLHNELHN*FT*QTQSS 65
           NLP +   HNELH     QT SS
Sbjct: 277 NLPNYYNEHNELHEHHNPQTPSS 299


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 179 PPG*TPGFCHISVVLESPDVQTSTQ 105
           PPG TPG  ++  +L+   + T +Q
Sbjct: 538 PPGNTPGHRNVPPILKRSSIGTPSQ 562


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = -2

Query: 239 FFFTKCANMTLL---FVYNKNFEP 177
           FFFT CAN +L    F Y  +F P
Sbjct: 324 FFFTLCANNSLYLSRFCYYPSFVP 347


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +2

Query: 113 KFEHREIPTQLKC----GRTQEFIQEVQN 187
           KF    IP+++K      +TQ+FIQ+ QN
Sbjct: 136 KFVSDSIPSKVKILTSEAKTQKFIQDAQN 164


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 79   QTQSSSL*MNTTNFFSQLKHKKSHKN 2
            +T  SS    TTN  + LK KK+H +
Sbjct: 1109 RTPVSSFAKQTTNKHANLKQKKTHSS 1134


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 157 SATFQLCWNLPMFK 116
           SA   LCW+LP F+
Sbjct: 248 SARHCLCWSLPYFQ 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,083,595
Number of Sequences: 5004
Number of extensions: 19434
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)