Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d13
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415...    25   8.5  
03_02_0536 - 9284079-9286034                                           25   8.5  
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929...    25   8.5  
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    25   8.5  

>07_01_0559 +
           4151054-4151178,4151306-4153018,4153121-4153412,
           4154327-4154636,4155041-4155261
          Length = 886

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 3   FLCDFLCFNCEKKLVVFI*SDEDCV 77
           F CD L   C++KL  F+ S +D V
Sbjct: 262 FCCDRLKDACDRKLASFVSSRQDAV 286


>03_02_0536 - 9284079-9286034
          Length = 651

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 121 TSGDSNTTEMWQNPGVYPG 177
           ++G +  T  WQNP   PG
Sbjct: 458 SNGGNEVTSAWQNPAAEPG 476


>02_03_0226 -
           16591383-16592030,16592132-16592211,16592246-16592971,
           16593060-16593192,16596839-16597518,16597604-16597666,
           16597740-16597916,16598414-16598542,16598638-16598796,
           16599057-16599224,16599418-16599519,16599812-16599857
          Length = 1036

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 94  CEVHCVEV*TSGDSNTTEMWQNPGVYPGGSK 186
           CE H   + TSG+ NT       G++ G  +
Sbjct: 160 CENHYDPIVTSGNQNTHSPMHESGIFQGNDR 190


>02_02_0453 +
           10420585-10421661,10422015-10422146,10422232-10422456,
           10422555-10422680,10422777-10422839,10423214-10423296,
           10424078-10424309,10424421-10424489,10424532-10424731,
           10424819-10424894,10425015-10425081,10425194-10425471,
           10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 91  NCEVHCVEV*TSGDSNTTEMWQNPGVYPG 177
           N +V C     S D +   +W   G+YPG
Sbjct: 277 NPDVQCWGTEESDDGDPPRLWVQNGMYPG 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,633,920
Number of Sequences: 37544
Number of extensions: 114926
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)