Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d13
         (240 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  29   0.58 
SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  29   0.58 
SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)         28   1.3  

>SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 177 SWINSWVLPHFSCVGISRCSNFYTMNFTID 88
           SW+N  +LPH   V   RCSN Y   +T D
Sbjct: 231 SWLNIHLLPHEVKVVEVRCSNGYGARWTSD 260


>SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 177 SWINSWVLPHFSCVGISRCSNFYTMNFTID 88
           SW+N  +LPH   V   RCSN Y   +T D
Sbjct: 231 SWLNIHLLPHEVKVVEVRCSNGYGARWTSD 260


>SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)
          Length = 1652

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 72   CVCQVNQL*SSLCRSLNIGRFQ 137
            CVC VN+L + +CR  +I  F+
Sbjct: 1458 CVCSVNKLFAKICRGKDIDTFE 1479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,998,284
Number of Sequences: 59808
Number of extensions: 144576
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 16,821,457
effective HSP length: 57
effective length of database: 13,412,401
effective search space used: 295072822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)