Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d13
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    27   1.8  
Z49908-4|CAA90095.1|  535|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AF045644-1|AAC02601.1|  543|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical pr...    25   5.4  

>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   DSCAIFCVSIVKKNWLCSSKATKIV 75
           D C  FCVS +K N+L S  + K++
Sbjct: 52  DICYSFCVSCMKTNFLVSQFSKKLI 76


>Z49908-4|CAA90095.1|  535|Caenorhabditis elegans Hypothetical
           protein C07E3.4 protein.
          Length = 535

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 92  IVKFIV*KFEHREIPTQLKCGRTQEFIQEVQNFYYKQTI 208
           ++ F++ +FEH+ I  QL     + F+++     Y++ I
Sbjct: 290 VLYFVIFQFEHKLIVAQLPQMENESFVEDFWYMIYQEQI 328


>AF045644-1|AAC02601.1|  543|Caenorhabditis elegans Hypothetical
           protein F57H12.5 protein.
          Length = 543

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 92  IVKFIV*KFEHREIPTQLKCGRTQEFIQEVQNFYYKQTI 208
           ++ F++ +FEH+ I  QL     + F+++     Y++ I
Sbjct: 298 VLYFVIFQFEHKLIVAQLPQMENESFVEDFWYMIYQEQI 336


>Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical
           protein F53H10.2 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 79  QTQSSSL*MNTTNFFSQLKHKKSHKN 2
           Q  S S  M +T+   Q  HKKSH N
Sbjct: 252 QIASPSFLMTSTSLLKQHLHKKSHHN 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,201,372
Number of Sequences: 27780
Number of extensions: 118481
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)