Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d13
         (240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   3.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   3.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   6.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   6.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 186 F*TSWINSWVLPHFSCVGISRCSNFYT 106
           F T W+    +P    +G++   NF+T
Sbjct: 319 FITFWLEWNAVPARVMIGVTTMLNFFT 345


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 186 F*TSWINSWVLPHFSCVGISRCSNFYT 106
           F T W+    +P    +G++   NF+T
Sbjct: 288 FITFWLEWNAVPARVMIGVTTMLNFFT 314


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 186 F*TSWINSWVLPHFSCVGISRCSNFYT 106
           F T W+    +P    +G++   NF+T
Sbjct: 339 FITFWLEWNAVPARVMIGVTTMLNFFT 365


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 186 F*TSWINSWVLPHFSCVGISRCSNFYT 106
           F T W+    +P    +G++   NF+T
Sbjct: 288 FITFWLEWNAVPARVMIGVTTMLNFFT 314


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 157 NPGVYPGGSKFL 192
           +PGVYP  + FL
Sbjct: 301 SPGVYPSTAGFL 312


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 124 SGDSNTTEMWQNPGVYPGGSKFLL 195
           +GD      W  PG   GGS  +L
Sbjct: 609 TGDLPLNIRWSYPGEEMGGSSGVL 632


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 142 LCWNLPMFKLLHNELH 95
           L WN+P  +L+H   H
Sbjct: 21  LGWNVPAEELIHIPEH 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,385
Number of Sequences: 438
Number of extensions: 1381
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)