Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d11
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    34   0.014
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    29   0.39 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   2.7  
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    26   3.6  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   4.8  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    25   6.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   6.3  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
 Frame = +2

Query: 161 PLPDLKITINEKEINVTKNIKKSDDDGLYDIFANTTIE-KNLVVGALLACQLSYTDLNIT 337
           P    K+ IN KE+  T+ IKK+++    + F     E KN  +G  +  + S       
Sbjct: 591 PTAYAKLIINNKEVYTTRKIKKNNNPSWEESFGTLLPEGKNATLGVQIFTEESEHPFGTA 650

Query: 338 GDDFVDFILYDKTGEL--TSTEMPEDSTDLSAS-KPVSLQNASDDASQLCT 481
                D     KTG L       P     +S   KP  L N S  +  L T
Sbjct: 651 NVSLQDLFAATKTGLLWFPLQHAPSGRVRMSVMWKPAQLNNDSISSMALAT 701


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 22/92 (23%), Positives = 38/92 (41%)
 Frame = +2

Query: 5   KVPTAIVIGSNFTILQTAKGTGPRLDITDVAVGPGEESVERSLLECAASHVAPLPDLKIT 184
           K PT + +GS          + PR  I ++         +   +E   +   P P L   
Sbjct: 102 KAPTHMDLGSRENTKGILSFSSPRYTIQNLPSTQSNRVFDAIRVEQGHTTYHPHPQLDSM 161

Query: 185 INEKEINVTKNIKKSDDDGLYDIFANTTIEKN 280
           I E   N    +++S +D +YDI+  ++ E N
Sbjct: 162 IQEYLSNGDLPLQQSTEDYVYDIYEASSKEPN 193


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 299 LACQLSYTDLNITGDDFVDFILYDKTGELTSTEMPEDSTDLSASKPVSLQNASDDASQLC 478
           +A  ++Y DL    +D    +      E+TST     +TD SAS P+  ++ S  +S   
Sbjct: 44  VATSINYADLLKRNEDLNASLSTGSPVEITSTSC---TTDTSASTPIITESTSSTSSAST 100

Query: 479 T 481
           T
Sbjct: 101 T 101


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 329 NITGDDFVDFILYDKTGELTSTEMPEDSTDLSASKPVSLQNAS 457
           N+TG  F      ++     ST  PE  T+ S+S   SLQ +S
Sbjct: 191 NVTGTTFSSQAPEERIASPISTSSPESLTNQSSSLQSSLQTSS 233


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 308 QLSYT-DLNITGDDFVDFILYDKTGELTSTEMPEDSTDLS 424
           Q+S T   N+ GD  V   +Y+  G++   E+P      S
Sbjct: 43  QMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYS 82


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 422 SASKPVSLQNASDDASQLCTSGIFLFCVLI 511
           S   P++L NAS D   +C S +   CVL+
Sbjct: 470 SFDMPLNLANASSDLCYVCHSALEEDCVLL 499


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 167 PDLKITINE--KEINVTKNIKKSDDDGL 244
           P L I +++   EINV + + KSDDD +
Sbjct: 511 PRLTIGVDDAVSEINVLEGVTKSDDDSI 538


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 311 LSYTDLNITGDDFVDFILYDKTGELTSTEMPEDSTDL---SASKPVSLQ-NASDDASQLC 478
           L+Y +     ++   +   D +GEL + E+ +DS +     +S  +S Q N + D  QL 
Sbjct: 41  LNYPNKQFNSENPSSYYNMDDSGELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLA 100

Query: 479 TS 484
           +S
Sbjct: 101 SS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,768
Number of Sequences: 5004
Number of extensions: 44107
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)