Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2d11
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0128 - 8746462-8746692,8747600-8747702,8748001-8748155 33 0.13
05_06_0263 + 26752759-26754393 32 0.40
04_03_0967 + 21318974-21319140,21321677-21321821,21322045-213221... 29 2.1
06_03_0389 - 20273637-20274383,20274488-20274979 29 2.8
06_03_0387 - 20244279-20245025,20245130-20245621 29 2.8
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 29 3.7
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346... 29 3.7
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814... 28 4.9
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 28 4.9
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 28 6.5
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417... 28 6.5
03_06_0139 + 31947413-31948087,31948869-31948911,31949837-31950132 27 8.6
>05_03_0128 - 8746462-8746692,8747600-8747702,8748001-8748155
Length = 162
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -3
Query: 288 TTKFFSIVVLAKMSYNPSSSLFLIFLVTFISFSLIVIFKSGSGATCDAAHSNKLLSTLSS 109
TT FF I + AK SY PS F++ ++SL+V+ A A + ++ +
Sbjct: 33 TTSFFGIQMEAKYSYTPSFIFFVVAYAVAAAYSLLVLAVPAGSALSRLALTTDVVLGMVL 92
Query: 108 PGPTATS 88
G A++
Sbjct: 93 AGAVASA 99
>05_06_0263 + 26752759-26754393
Length = 544
Score = 31.9 bits (69), Expect = 0.40
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Frame = +2
Query: 44 ILQTAKGTGPRLDITDVAVGPGEESVERSLLECAASHVAPLPDLKITINEKEINVTKNIK 223
I+ T K + P+L++ ++A ++L EC + + L L + NE + + I
Sbjct: 375 IINTLKQSAPQLEVLEMAGNEINAKASQALAECLTA-MQSLKKLTLAENELKDDGAVVIA 433
Query: 224 KSDDDGLYDIFANTTIEKNLV--VGA-----LLACQLSYTDLNITGDDFVD 355
KS +DG D+ + N++ VGA +A + + LNI G+ D
Sbjct: 434 KSLEDGHQDL-KELDVSTNMLQRVGARCFAQAIANKPGFVQLNINGNFISD 483
>04_03_0967 +
21318974-21319140,21321677-21321821,21322045-21322164,
21322261-21322395,21322503-21322564,21322804-21322879,
21323555-21323656,21323732-21323848,21324403-21324461,
21324927-21325101,21325233-21325367,21325429-21325545,
21325686-21325794,21325939-21326051,21326561-21326615,
21326657-21326769
Length = 599
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 503 HKIGK--SPMCRVG*RHQRHFAMILAYWRSGRYCPRA 399
H++G +PM Q F+M AYW++G++ RA
Sbjct: 19 HRVGAPTNPMATALLTDQYQFSMAYAYWKAGKHADRA 55
>06_03_0389 - 20273637-20274383,20274488-20274979
Length = 412
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 32 SNFTILQTAKGTGPRLDITDVAVGPGEESVERSLLECAASHVAPLPDLKITINEKEI-NV 208
S +I+ T GTG +++GPG E V S + C H + L +EK++ +V
Sbjct: 222 SKISIIDTVIGTGDDC----ISIGPGTEGVNISGVTCGPGHGISVGSLGRYKDEKDVTDV 277
Query: 209 T-KN--IKKS 229
T KN +KKS
Sbjct: 278 TVKNCVLKKS 287
>06_03_0387 - 20244279-20245025,20245130-20245621
Length = 412
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 32 SNFTILQTAKGTGPRLDITDVAVGPGEESVERSLLECAASHVAPLPDLKITINEKEI-NV 208
S +I+ T GTG +++GPG E V S + C H + L +EK++ +V
Sbjct: 222 SKISIIDTVIGTGDDC----ISIGPGTEGVNISGVTCGPGHGISVGSLGRYKDEKDVTDV 277
Query: 209 T-KN--IKKS 229
T KN +KKS
Sbjct: 278 TVKNCVLKKS 287
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 341 DDFVDFILYDKTGELTSTEMPEDSTDLSASKPVSLQ-NASDDASQ 472
DDF+D L + + + PE++ L+AS P + N SDD +Q
Sbjct: 420 DDFLDTPLEAVKNMIRNPKTPEEAQALAASPPKDMDFNNSDDETQ 464
>04_04_0027 + 22232781-22233051,22234256-22234329,22234471-22234638,
22234812-22234971,22235062-22235145,22235781-22236078,
22236158-22236364,22236465-22236735,22236971-22237055,
22237141-22237182,22237302-22237350,22237825-22237894,
22238314-22238463,22238592-22238619,22238856-22238990,
22240693-22241469,22242133-22242192,22242367-22242413
Length = 991
Score = 28.7 bits (61), Expect = 3.7
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +2
Query: 11 PTAIVIGSNFTILQTAKGTGPRLDITDVAVGPGEESVERSLLEC-AASHVAPLPDLKITI 187
P +VI T+ ++G G L +A+G G E V R + C AAS + P L +
Sbjct: 781 PVPVVIDRTTTV---SRGVGCTLLHLGMALGSGGEVVRRVGVACTAASMLNDTPGLLALL 837
Query: 188 NEK-EINVTKNIKKSDDDGLYDIFANTTIEKNLV 286
+ + + K + KS +D D +N I K++V
Sbjct: 838 DARSQEQPLKILLKSVEDA-KDFISNWKINKDVV 870
>09_04_0078 +
14379720-14379786,14379903-14379974,14381093-14381497,
14382835-14382911,14383016-14383135,14383227-14383997,
14384933-14385146,14385269-14385735
Length = 730
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 20 IVIGSNFTILQTAKGTGPRLDITDVAVGPGEESVERSLLECA 145
+V+G+N T+L T + G L+I V G+ + L CA
Sbjct: 77 VVVGANTTVLATRRWVG--LEIDSVPGNEGQRDIVNYYLRCA 116
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 371 KTGELTSTEMPEDSTDLSASKPVSLQNASDD 463
K+ E T ++PED ++ SASKP + D
Sbjct: 657 KSTEKTKDDLPEDGSNKSASKPKEASSGGKD 687
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 254 FANTTIEKNLVVGALLACQLSYTDLNITGDDFVDFILYDKTGE 382
F TT+E+N + A+ + L + D+ ++ D +DF++ + E
Sbjct: 690 FTLTTLERNKSLYAISSMPLEFRDIIVSAMDRIDFMVLNLRSE 732
>03_02_0757 -
10940993-10941112,10941218-10941418,10941661-10941795,
10941948-10942088,10942214-10942405,10942624-10942748,
10942828-10942903,10943024-10943173,10943467-10943856,
10944078-10944227,10944430-10944710,10945034-10945230,
10945836-10946035,10946422-10946469,10946566-10946688,
10946771-10946882,10946988-10947103,10947526-10947660
Length = 963
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 400 HLRGCQLTCFIIKYEVYKIIARNIEICIRKL 308
H+ GCQ I +V ARNIE +RK+
Sbjct: 107 HILGCQTLAKFIYSQVDNTYARNIESLVRKV 137
>03_06_0139 + 31947413-31948087,31948869-31948911,31949837-31950132
Length = 337
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 413 YCPRASPWMSAHLFYHKV 360
Y PR+SPW+ +FY +V
Sbjct: 19 YTPRSSPWLDLKVFYVRV 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,013,758
Number of Sequences: 37544
Number of extensions: 269843
Number of successful extensions: 742
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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