Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d11
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)                 32   0.31 
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)           31   0.53 
SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_31422| Best HMM Match : RVT_1 (HMM E-Value=1)                       29   2.2  
SB_7771| Best HMM Match : RVT_1 (HMM E-Value=5.3e-13)                  29   2.2  
SB_6517| Best HMM Match : RVT_1 (HMM E-Value=2.3)                      29   2.2  
SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)                       29   2.2  
SB_57918| Best HMM Match : RVT_1 (HMM E-Value=1.1e-28)                 29   2.2  
SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)                      29   2.2  
SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)                29   2.9  
SB_27397| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    28   6.6  

>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
          Length = 383

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 209 TKNIKKSDDDGLYDIFANTT--IEKNLVVGALLACQLSYTDLNITGDDF--VDFILYDKT 376
           TK +K  +     D    TT  IEK L     L  + S+TD N +  D+  +D  +Y   
Sbjct: 57  TKRVKSKEHKDKDDWKTQTTLRIEKELANFTTLKREFSFTDKNSSSRDYKRIDKDIYSSL 116

Query: 377 GELTSTEMPE 406
           G+LT  + P+
Sbjct: 117 GDLTLDKKPK 126


>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
          Length = 1003

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +2

Query: 284 VVGALLACQLSYTDLNITGDDFVDFILYDKTGELTSTEMPEDSTDLSASKPVSLQNASDD 463
           V G    C  +  + +++ ++ +DF++  + GE  S  +P  S   +  K  S  N +DD
Sbjct: 452 VYGVSFECNFTAPE-SMSNEEKLDFLV-SRCGEKISWVIPRGSPRRTCFKVASCSNNTDD 509

Query: 464 ASQLCTSG 487
               CT+G
Sbjct: 510 CDARCTNG 517


>SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 149 SHVAPLPDLKITINEKE---INVTKNIKKSDDDGLYDIFANTTIEKNL 283
           +HV PLP + +   + E   IN+T  I ++ +  +Y+I    T+E+ L
Sbjct: 175 AHVTPLPKVDVPKGKTEYRGINITPVIARAFEKAVYNIHVRETVEELL 222


>SB_31422| Best HMM Match : RVT_1 (HMM E-Value=1)
          Length = 374

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 149 SHVAPLPDLKITINEKE---INVTKNIKKSDDDGLYDIFANTTIEKNL 283
           +HV PLP + +   + E   IN+T  I ++ +  +Y+I    T+E+ L
Sbjct: 178 AHVTPLPKVDVPKGKTEYRGINITPVIARAFEKAVYNIHVRETVEELL 225


>SB_7771| Best HMM Match : RVT_1 (HMM E-Value=5.3e-13)
          Length = 384

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 149 SHVAPLPDLKITINEKE---INVTKNIKKSDDDGLYDIFANTTIEKNL 283
           +HV PLP + +   + E   IN+T  I ++ +  +Y+I    T+E+ L
Sbjct: 33  AHVTPLPKVDVPKGKTEYRGINITPVIARAFEKAVYNIHVRETVEELL 80


>SB_6517| Best HMM Match : RVT_1 (HMM E-Value=2.3)
          Length = 275

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 149 SHVAPLPDLKITINEKE---INVTKNIKKSDDDGLYDIFANTTIEKNL 283
           +HV PLP + +   + E   IN+T  I ++ +  +Y+I    T+E+ L
Sbjct: 79  AHVTPLPKVDVPKGKTEYRGINITPVIARAFEKAVYNIHVRETVEELL 126


>SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)
          Length = 270

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 149 SHVAPLPDLKITINEKE---INVTKNIKKSDDDGLYDIFANTTIEKNL 283
           +HV PLP + +   + E   IN+T  I ++ +  +Y+I    T+E+ L
Sbjct: 166 AHVTPLPKVDVPKGKTEYRGINITPVIARAFEKAVYNIHVRETVEELL 213


>SB_57918| Best HMM Match : RVT_1 (HMM E-Value=1.1e-28)
          Length = 395

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 149 SHVAPLPDLKITINEKE---INVTKNIKKSDDDGLYDIFANTTIEKNL 283
           +HV PLP + +   + E   IN+T  I ++ +  +Y+I    T+E+ L
Sbjct: 47  AHVTPLPKVDVPKGKTEYRGINITPVIARAFEKAVYNIHVRETVEELL 94


>SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)
          Length = 296

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 149 SHVAPLPDLKITINEKE---INVTKNIKKSDDDGLYDIFANTTIEKNL 283
           +HV PLP + +   + E   IN+T  I ++ +  +Y+I    T+E+ L
Sbjct: 192 AHVTPLPKVDVPKGKTEYRGINITPVIARAFEKAVYNIHVRETVEELL 239


>SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 149 SHVAPLPDLKITINEKE---INVTKNIKKSDDDGLYDIFANTTIEKNL 283
           +HV PLP + +   + E   IN+T  I ++ +  +Y+I    T+E+ L
Sbjct: 226 AHVTPLPKVDVPKGKTEYRGINITPVIARAFEKAVYNIHVRETVEELL 273


>SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 280  ILFYCCISKNVIQSIVVTLFNIFGYVYLFFVN 185
            +LF  C++   I +I++  FN++ +V +FFVN
Sbjct: 913  VLFIGCVATGCIGAIIMLAFNLYIFV-IFFVN 943


>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
          Length = 405

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 368 DKTGELTSTEMPEDSTDLSASKPVSLQNASDDAS 469
           + TGE   +E P+DST  S + P S +NA+ + S
Sbjct: 83  ESTGEAEQSEEPKDSTVDSKATPDSEENATKETS 116


>SB_27397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 525 NKLLKISTQNRKIPDVQSWLASSEAFCNDTGLL 427
           NKLL IS  +      QSWLAS E    D  L+
Sbjct: 67  NKLLGISLYDSYADSSQSWLASQEIVAIDNSLI 99


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 34/140 (24%), Positives = 52/140 (37%)
 Frame = +2

Query: 11  PTAIVIGSNFTILQTAKGTGPRLDITDVAVGPGEESVERSLLECAASHVAPLPDLKITIN 190
           P  +V GSNFTI     GT P      +AV     SV  +      SH+    +   T  
Sbjct: 29  PQTVVEGSNFTIWCNVSGTAP----LKIAVSHPNGSVLTNSGSYTFSHITRRDEGTYTCT 84

Query: 191 EKEINVTKNIKKSDDDGLYDIFANTTIEKNLVVGALLACQLSYTDLNITGDDFVDFILYD 370
               N   N   + +  +     NTT+  N  +G +    +S     +   D +++ LY 
Sbjct: 85  VNNGNECSNDTNTTNITVNYKPENTTLIPNEHIGCVRDV-VSLNCSALANPDNINYTLYR 143

Query: 371 KTGELTSTEMPEDSTDLSAS 430
               L S    +    L+AS
Sbjct: 144 NDTALASNMNGKFVVSLNAS 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,487
Number of Sequences: 59808
Number of extensions: 320073
Number of successful extensions: 802
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)