Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d11
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40942-4|AAC47069.2|  486|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U40942-3|AAU05564.1|  487|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U41264-3|AAA82423.1|  574|Caenorhabditis elegans Hypothetical pr...    29   1.9  
L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    29   1.9  
Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.      29   3.3  
AF045639-3|AAL11098.1|  383|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF045639-2|AAC02568.2|  382|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z81575-2|CAB04639.1|  339|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical...    28   5.8  

>U40942-4|AAC47069.2|  486|Caenorhabditis elegans Hypothetical
           protein K02E10.4a protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 243 NPSSSLFLIFLVTFIS---FSLIVIFKSGSGATCDAAHSNKLLSTL 115
           NPS++ F+I   TF+S     L+V F S    TC      KL S+L
Sbjct: 62  NPSTTFFMIPTTTFVSCYFLILLVYFASAQAPTCPNGQLPKLDSSL 107


>U40942-3|AAU05564.1|  487|Caenorhabditis elegans Hypothetical
           protein K02E10.4b protein.
          Length = 487

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 243 NPSSSLFLIFLVTFIS---FSLIVIFKSGSGATCDAAHSNKLLSTL 115
           NPS++ F+I   TF+S     L+V F S    TC      KL S+L
Sbjct: 62  NPSTTFFMIPTTTFVSCYFLILLVYFASAQAPTCPNGQLPKLDSSL 107


>U41264-3|AAA82423.1|  574|Caenorhabditis elegans Hypothetical
           protein F10E7.9 protein.
          Length = 574

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 452 HF-AMILAYWRSGRYCPRASPWMSAHLFYH 366
           HF A+I  YW  GR CP   P +S     H
Sbjct: 487 HFVALIALYWYIGRVCPTCGPGISTFSLCH 516


>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 461 HQRHFAMILAYWRSGRYCPRASPWMS 384
           H RH +   AYWR   +C R   WM+
Sbjct: 524 HDRHISC--AYWRGQNFCTRRRQWMA 547


>Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical
           protein F09B12.6 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 122 ERSLLECAASHVAPLPDLKITIN--EKEINVTKNIKKSDDDGLYDIFANTTIEKN 280
           ++S + C  + +    D K T    E+EI++T +++++ DD  YD  +    E+N
Sbjct: 516 QKSAVLCGITVITGKEDAKDTAQNMEEEIHLTPSVRRNHDDYYYDESSGPANEEN 570


>AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 122 ERSLLECAASHVAPLPDLKITIN--EKEINVTKNIKKSDDDGLYDIFANTTIEKN 280
           ++S + C  + +    D K T    E+EI++T +++++ DD  YD  +    E+N
Sbjct: 516 QKSAVLCGITVITGKEDAKDTAQNMEEEIHLTPSVRRNHDDYYYDESSGPANEEN 570


>AF045639-3|AAL11098.1|  383|Caenorhabditis elegans Hypothetical
           protein B0212.4b protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = -3

Query: 276 FSIVVLAKMSYNPSSSLFLIFLVTFISFSLIVIFKSGS-GATCDAAHS---NKLLSTLSS 109
           F + +  K  + P++S+F++ ++      +I +FKSGS   TC   H       L T+  
Sbjct: 52  FLVRIANKTHFLPTTSVFMMEVLKLGFCLIITLFKSGSIKKTCHELHKTIWQNRLETMKV 111

Query: 108 PGPTAT-SVMSNLGPVPLAVCKMVKFDPMTMAV 13
             P    ++ +NL  + LA       DP T +V
Sbjct: 112 AVPAVVYAIQNNLYYIALA-----NVDPTTYSV 139


>AF045639-2|AAC02568.2|  382|Caenorhabditis elegans Hypothetical
           protein B0212.4a protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = -3

Query: 276 FSIVVLAKMSYNPSSSLFLIFLVTFISFSLIVIFKSGS-GATCDAAHS---NKLLSTLSS 109
           F + +  K  + P++S+F++ ++      +I +FKSGS   TC   H       L T+  
Sbjct: 51  FLVRIANKTHFLPTTSVFMMEVLKLGFCLIITLFKSGSIKKTCHELHKTIWQNRLETMKV 110

Query: 108 PGPTAT-SVMSNLGPVPLAVCKMVKFDPMTMAV 13
             P    ++ +NL  + LA       DP T +V
Sbjct: 111 AVPAVVYAIQNNLYYIALA-----NVDPTTYSV 138


>Z81575-2|CAB04639.1|  339|Caenorhabditis elegans Hypothetical
           protein R08H2.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = -3

Query: 339 PVILRSV*ESWHANNAPTTKFFSIVVLAKMSYNPSSSLFLIFLVTFISFSLIVIFKSGSG 160
           P++L      +H    P   + ++ +     Y P    F+I+++     +L  IFK G  
Sbjct: 267 PILLFFTTPIFHIGFGP---YINVAMATLAIYPPMDQFFIIYIIKDFRTALKEIFKCGK- 322

Query: 159 ATCDAAHSNKLLST 118
           A  DA+ S++  S+
Sbjct: 323 AVSDASSSSQAFSS 336


>AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical
           protein F53C3.2 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 140 CAASHVAPLPDLKITINEKEINVTKNI 220
           C+ +  + + +LK+ IN  EINVT+N+
Sbjct: 33  CSEASKSHVTNLKVKINSFEINVTENV 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,464,042
Number of Sequences: 27780
Number of extensions: 248975
Number of successful extensions: 893
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)