Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d09
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    27   6.4  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    27   6.4  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    27   6.4  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    27   6.4  

>Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical
           protein ZK863.8 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 482 YMYKQTIISFSF*NEKSFGKFNYMSTSSSLIQNDCLTKYLDDA 354
           Y YK  + S  F N+K+F       +S+  IQN C+    D A
Sbjct: 50  YCYKSYLESRDFNNDKTFVSGRACGSSNLCIQNGCVGTNTDKA 92


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 324 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 443
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 352 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 391


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 324 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 443
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 329 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 368


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 324 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 443
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 491 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 530


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 324 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 443
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 440 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,206,307
Number of Sequences: 27780
Number of extensions: 169243
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)