Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d09
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.9  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 470 VCTYTLKHKNGNNKIKP 520
           V T T+K++N NN ++P
Sbjct: 252 VVTDTIKYRNDNNIVRP 268


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 357 CLIYALT*KYICVNTRTHFNLKFDIHNAI 271
           C IYA   +++CVN   +   K  +HN +
Sbjct: 372 CFIYASLLEFVCVN---YVGRKRPMHNVV 397


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 357 CLIYALT*KYICVNTRTHFNLKFDIHNAI 271
           C IYA   +++CVN   +   K  +HN +
Sbjct: 341 CFIYASLLEFVCVN---YVGRKRPMHNVV 366


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 357 CLIYALT*KYICVNTRTHFNLKFDIHNAI 271
           C IYA   +++CVN   +   K  +HN +
Sbjct: 392 CFIYASLLEFVCVN---YVGRKRPMHNVV 417


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 357 CLIYALT*KYICVNTRTHFNLKFDIHNAI 271
           C IYA   +++CVN   +   K  +HN +
Sbjct: 341 CFIYASLLEFVCVN---YVGRKRPMHNVV 366


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 470 VCTYTLKHK 496
           +C YTLKHK
Sbjct: 454 LCPYTLKHK 462


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 7  IISKLCRRGCDHPASYNYLVW 69
          ++   CR  C HP  ++ L W
Sbjct: 30 LVRAFCRN-CIHPTVFSVLFW 49


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 7   IISKLCRRGCDHPASYNYLVW 69
           ++   CR  C HP  ++ L W
Sbjct: 478 LVRAFCRN-CIHPTVFSVLFW 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,383
Number of Sequences: 438
Number of extensions: 2167
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)