Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d08
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   6.1  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   8.1  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 733 SPKVEYTLLEHRSISRSASVSKLIQQIDLV 644
           +P+   TLLEH  ++ + ++  L+Q  D V
Sbjct: 119 TPEPARTLLEHSFVAFNTNIISLVQNKDYV 148


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 434  FMIV-FRQTHNCTLIISGAWTI--ASTMMSLIIARSCSWMLNGIGSPSS 297
            FM+V F    N  LI++   +   A  MM++I+  +     +G+GSPS+
Sbjct: 957  FMLVCFTCKSNIQLIVAQILSTGYALIMMAVIVGTALQLREDGVGSPSA 1005


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 434  FMIV-FRQTHNCTLIISGAWTI--ASTMMSLIIARSCSWMLNGIGSPSS 297
            FM+V F    N  LI++   +   A  MM++I+  +     +G+GSPS+
Sbjct: 957  FMLVCFTCKSNIQLIVAQILSTGYALIMMAVIVGTALQLREDGVGSPSA 1005


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 434  FMIV-FRQTHNCTLIISGAWTI--ASTMMSLIIARSCSWMLNGIGSPSS 297
            FM+V F    N  LI++   +   A  MM++I+  +     +G+GSPS+
Sbjct: 957  FMLVCFTCKSNIQLIVAQILSTGYALIMMAVIVGTALQLREDGVGSPSA 1005


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 434  FMIV-FRQTHNCTLIISGAWTI--ASTMMSLIIARSCSWMLNGIGSPSS 297
            FM+V F    N  LI++   +   A  MM++I+  +     +G+GSPS+
Sbjct: 957  FMLVCFTCKSNIQLIVAQILSTGYALIMMAVIVGTALQLREDGVGSPSA 1005


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 206 LCKMMSTYQCAKLVSSISRT*SRQDGKIKSVKR 304
           LC M+STY    +   ++RT  + + K K  ++
Sbjct: 318 LCGMISTYLIIMIQLDLARTVPKFENKNKETEQ 350


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 675 TEADLEMLLCSNKVYSTFGL 734
           T  D++  LC++ +YS  GL
Sbjct: 40  TVEDIDPTLCTHLIYSFVGL 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,419
Number of Sequences: 336
Number of extensions: 4028
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)