Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2d08
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0433 + 15878709-15878798,15879271-15879336,15880608-158807... 96 2e-20
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 91 7e-19
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 48 6e-06
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 45 8e-05
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 31 1.00
03_01_0387 + 3008323-3008443,3008561-3008876,3008982-3009294 29 3.0
04_03_0578 - 17463545-17464417 29 4.0
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 29 5.3
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927... 29 5.3
02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333 29 5.3
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436... 28 7.0
03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676 28 7.0
01_06_1203 - 35401189-35401626,35401723-35401857 28 7.0
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 7.0
01_04_0046 - 15400890-15403097 28 9.3
01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362... 28 9.3
>04_03_0433 +
15878709-15878798,15879271-15879336,15880608-15880743,
15880813-15880900,15881674-15881826,15882214-15882376,
15882446-15882630,15882696-15882869,15883222-15883367,
15883498-15883621,15883702-15883882,15884986-15885145,
15885235-15885276,15885349-15885467,15885548-15885746,
15886263-15886394,15887546-15887649,15887750-15887929,
15888202-15888249
Length = 829
Score = 96.3 bits (229), Expect = 2e-20
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 2/189 (1%)
Frame = +1
Query: 193 LLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEA 372
LLQ+++ + ++ VRQ ++ KN + W + EE IP E D++M+R+ I+
Sbjct: 63 LLQIIVDGNCDMAVRQFASIHFKNFVAKNWSPTDPEEKHIIP----ESDKSMVRENILGF 118
Query: 373 IVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKN 552
+ Q P ++R QL +KT+I D+PE+W ++ + L++ D GAL L L +
Sbjct: 119 VTQLPPLLRAQLGESIKTLILADYPEQWPSLLPWVTHNLESQD--QIFGALYVLRILARK 176
Query: 553 YEYHISEKRTPLIEAMNLLLPMIYNLIVNLEP--DQSVESILIQKQILKCFYALTKYILP 726
YE+ ++R PL + + P + N++ NL P + +E + K I K F++ +P
Sbjct: 177 YEFKSEDERIPLYQIVEECFPRLLNILRNLVPISNPPIEVADLIKLICKIFWSSIYLEIP 236
Query: 727 LDLITRDAF 753
L + F
Sbjct: 237 KQLFDPNVF 245
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 91.5 bits (217), Expect = 7e-19
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 2/189 (1%)
Frame = +1
Query: 193 LLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEA 372
LLQ+++ ++ VRQ ++ KN + W + EE + I E D+ M+R+ I+
Sbjct: 12 LLQIIVDGSCDMAVRQVASIHFKNFVAKNWSPNDPEESQ----KISESDKLMVRENILGF 67
Query: 373 IVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKN 552
IVQ P ++R QL +KTII D+PE+W ++ + L++ N GAL L L +
Sbjct: 68 IVQVPPLLRAQLGESIKTIIHSDYPEQWPVLLHWVTHNLES--ENQIFGALYVLRVLSRK 125
Query: 553 YEYHISEKRTPLIEAMNLLLPMIYNLIVNLEP--DQSVESILIQKQILKCFYALTKYILP 726
YE+ E+R PL + P + ++ L + +E + K I K F++ +P
Sbjct: 126 YEFKSEEERIPLYHIVEETFPRLLSIFSKLVQIVNPPIEVADLIKLICKIFWSSIYLEIP 185
Query: 727 LDLITRDAF 753
L + F
Sbjct: 186 KQLFDPNVF 194
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 48.4 bits (110), Expect = 6e-06
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 8/152 (5%)
Frame = +1
Query: 121 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKERE 300
D R+ AE+ + GF ALL + + R A V KNL+ W +
Sbjct: 22 DAAARRAAEQSIESAKCSPGFGLALLGLASSPRHDPQSRLAASVQFKNLLRRRWPKPSPD 81
Query: 301 EG-EPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKI 477
G + ++ D A+I+ +++ ++ AP +I+ QL L DFP RW ++ I
Sbjct: 82 GGGDDDADHLPPSDCAIIKANLLQLLLTAPPLIQAQLSEALAAAAASDFPARWESLLPSI 141
Query: 478 HIFLQN-------PDANSWMGALQCLYQLIKN 552
L P NS + A L+ +N
Sbjct: 142 VSSLGTALSAGDIPATNSLLAAAASLFSRFRN 173
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 44.8 bits (101), Expect = 8e-05
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 121 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQN--DVNIPVRQAGVVYLKNLITSGWQDKE 294
D RQ AE L+Q GF LL ++ + + VR V+LKN +T W++
Sbjct: 22 DAATRQPAEALLAQCEARQGFCSCLLAIITSRGEESDDDVRLLAAVHLKNCVTRCWRNSV 81
Query: 295 REEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDK 474
I +++ IR ++ + + I +QL + I+ D+P+ W+ +
Sbjct: 82 DSPA------IDNEEKVYIRKSLLLNMREENGKIALQLAALIARIVYFDYPKEWSDVFSV 135
Query: 475 IHIFLQNPDANSWMGALQCLYQLIK 549
+ LQ D + L++ +K
Sbjct: 136 LAQQLQTSDVFTSYQVSTVLFRSLK 160
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 31.1 bits (67), Expect = 1.00
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 121 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGW 282
D + R+QAEEQ+ ++ + PAL+ ++ VRQ V L+ ITS W
Sbjct: 16 DNDARRQAEEQIRRLARDPQVVPALVH-HLRTAKTPNVRQLAAVLLRKKITSHW 68
>03_01_0387 + 3008323-3008443,3008561-3008876,3008982-3009294
Length = 249
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 189 SSTASCYAK*CQHTSAPSWCRLSQEL 266
+S CY C ++ AP WC+L + +
Sbjct: 70 ASCGQCYLIICDYSKAPDWCKLGKAI 95
>04_03_0578 - 17463545-17464417
Length = 290
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 442 FPERWT-QIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPM 618
+ +RW+ + +D +H FL+ +AN G + C KN + + S RT L
Sbjct: 7 YADRWSKEFIDGVHYFLRVAEANRHKGFICCPCNKCKNQKEY-SASRTIHFHLFELGFMS 65
Query: 619 IYN 627
YN
Sbjct: 66 SYN 68
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 364 VEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVD 471
VE + APEI V C + + +H+ ERW ++++
Sbjct: 681 VEQCLLAPEIRNVVACEGAERVARHERLERWRRLME 716
>06_01_1126 -
9277885-9277935,9278129-9278209,9278297-9278350,
9278433-9278564,9278641-9278715,9279056-9279133,
9279215-9279327,9279421-9279535,9280565-9280754,
9281355-9281464,9281559-9281654,9281756-9281818,
9281911-9281988,9282452-9282564,9282664-9282721,
9282797-9282920,9282999-9283060,9283131-9283195,
9283264-9283324,9284242-9284307,9284472-9284531,
9284830-9284960,9285517-9285592,9285701-9285769,
9286065-9286112,9286552-9286671,9286918-9287034,
9287290-9287405,9288348-9288519,9289057-9289100,
9290359-9290712,9291680-9291806
Length = 1072
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +1
Query: 322 NIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVD-KIHIFLQNP 498
N Q +IR +++ ++ + IR + + + I + D+PE W +++ + +
Sbjct: 169 NFSCQKIVIIRQLLLTSLDDSHGKIRTAIGMAVAAIGQQDWPEDWPELLPYLLKLISDQS 228
Query: 499 DANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYNLI 633
+ GAL+CL L + + K P L P +Y++I
Sbjct: 229 NGCGVRGALRCLALLSDDLDDTCIPKLVP------ELFPSLYSII 267
>02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333
Length = 588
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 442 FPERWTQIVDKIHIFLQNPDANSWMGALQCLYQL 543
F ERW Q +D++H S+ GA++ LY L
Sbjct: 420 FVERWGQALDRVHCADVLKSIKSFAGAVRSLYGL 453
>07_03_1777 +
29442542-29442652,29443394-29443455,29443540-29443681,
29444043-29444261,29444374-29444440,29444883-29445288,
29445669-29445816,29445903-29446063,29446320-29446419,
29446522-29446596,29446677-29446811,29446921-29447013,
29447475-29447657,29447738-29447842,29448614-29448772,
29449142-29449186,29449296-29449517,29449775-29449881,
29449971-29450027,29450132-29450213,29450291-29450455
Length = 947
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 391 IIRVQLCVCLKTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIK 549
+I +QL V + I + D+P+ W + + LQ+ D + L++ +K
Sbjct: 37 LIALQLAVLISKIARLDYPKEWPDLFSLLAQQLQSADVLASHRVFMVLFRTLK 89
>03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676
Length = 240
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 189 SSTASCYAK*CQHTSAPSWCRLSQEL 266
+S CY C + AP WC+L + +
Sbjct: 70 ASCGQCYLIICDYGKAPDWCKLGKAI 95
>01_06_1203 - 35401189-35401626,35401723-35401857
Length = 190
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -3
Query: 446 GKSCFMIVFRQTHNCTLIISGAWTIASTMMSLIIARSCSWMLNGIGS 306
G CF+ VFR ++ +T T++ L++A ++ + + S
Sbjct: 91 GGWCFLYVFRAADQPVVLFGRTFTDRETLLGLVVASVLAFFMTSVAS 137
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 56 NLMYNPQIWIPES*LKYYAPLLILINGNKQKSNFP 160
+L + +IW+P S LK +A + +I + +K+N P
Sbjct: 949 SLYLDERIWLPSSLLKAFASIKQVIFSSMEKNNVP 983
>01_04_0046 - 15400890-15403097
Length = 735
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +1
Query: 454 WTQIVDKIHIFL----QNPDANSWMGALQCLYQLIKNYEYHISEK 576
W ++ ++H+F+ Q+P+A + L+ L + +K+ YH S K
Sbjct: 664 WVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKDEGYHSSSK 708
>01_04_0019 -
15134494-15135863,15135966-15136083,15136226-15136278,
15136293-15137271,15138980-15139054
Length = 864
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 233 TGMLTSFCITTCSRAGANPIIL*IWESCSSACCR*LGSIVARNISINFLVSIFVDCTLNY 54
TG T FC C + II+ IW + A LG A +I + F+ I+ L Y
Sbjct: 328 TGKQTLFCSLHCDSSTTYFIIIYIW---TEAMYADLGHFTAASIRVAFVGLIYPCLVLQY 384
Query: 53 L-KITFVSQ 30
+ + F+S+
Sbjct: 385 MGQAAFLSK 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,955,016
Number of Sequences: 37544
Number of extensions: 423459
Number of successful extensions: 961
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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