Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d08
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)                 81   7e-16
SB_38692| Best HMM Match : IBN_N (HMM E-Value=8.2e-22)                 37   0.015
SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)             29   4.1  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        29   4.1  
SB_55861| Best HMM Match : Transposase_27 (HMM E-Value=0)              29   5.4  
SB_4483| Best HMM Match : K-box (HMM E-Value=10)                       29   5.4  
SB_29969| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_19252| Best HMM Match : Sigma54_DBD (HMM E-Value=6.5)               28   7.2  
SB_17745| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)                    28   9.5  
SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)                   28   9.5  

>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
          Length = 421

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
 Frame = +1

Query: 145 EEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKEREE--GEPIP 318
           +   SQ+  + GF   LLQ VM N++ +P+RQA  +YLKN++   W+++   +     +P
Sbjct: 98  DSSTSQLKFVPGFVTLLLQSVMSNEIQLPIRQAACIYLKNMVVQYWKERNPSDFPDGDVP 157

Query: 319 FNIHEQDRAMIRDIIVEAIVQAPEIIRV 402
           F I EQD+ +IR+ I+EA++ AP++IRV
Sbjct: 158 FVIAEQDKVVIREHIIEAVISAPDLIRV 185


>SB_38692| Best HMM Match : IBN_N (HMM E-Value=8.2e-22)
          Length = 125

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +1

Query: 94  LIEILR--ATIDPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNL 267
           ++E+LR  ++  P   + AE++L +  +  GF   L+Q+     V++ +R   V+Y+KN 
Sbjct: 12  VLEVLRQGSSQVPGLLRPAEQRLHEWERHCGFYQTLMQIFSNRSVDVNIRWLAVLYIKNG 71

Query: 268 ITSGWQ 285
           I   W+
Sbjct: 72  IDRYWR 77


>SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)
          Length = 774

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 748 HPWLSSPKVEYTLLEHRSISRSASVSKLIQQIDLVPS 638
           +PWL SPK  Y  +  R +S  +   + ++ + L PS
Sbjct: 424 NPWLDSPKHSYAEVLKRGLSGKSQAQRHLKPMTLFPS 460


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
 Frame = +1

Query: 61   NVQSTNMDTRKLIEILRATI--DPNQRQQAEEQLSQIH--------KIIGFAPAL---LQ 201
            N+Q +N+D     E+LR T+    N+ +  ++Q S++         KI+G+   L    Q
Sbjct: 1969 NLQKSNVDLNGTNEVLRNTLIEKENETEWLKQQYSELEDESKTLKAKILGYRDELEREEQ 2028

Query: 202  VVMQNDVNIPVRQAGVVYLKNLITSGWQDKEREEGEPIPFNIHEQD 339
             +      I  R A +  L+ ++ +  +D E+ +GE +  N    D
Sbjct: 2029 AISNLQNTIEDRDAQINELEYVLKNFRRDMEKLQGEMVAVNASSTD 2074


>SB_55861| Best HMM Match : Transposase_27 (HMM E-Value=0)
          Length = 125

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 421 KTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKR-TPLIEA 597
           KT++ H F ER    + ++   L   D   WM     LY+     + H+  KR T  IE 
Sbjct: 26  KTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIER 85

Query: 598 MNLLL 612
            NL L
Sbjct: 86  HNLNL 90


>SB_4483| Best HMM Match : K-box (HMM E-Value=10)
          Length = 100

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 31  CETKVIFK*FNVQSTNMDTRKLIEILRATIDPNQRQQAEEQLSQIHKI 174
           C   V+F   +VQS+++D  K ++ L++T+    RQ   +QLS   KI
Sbjct: 11  CCALVLF--VSVQSSSVDLEKSVKSLKSTVALLARQMMLQQLSMEEKI 56


>SB_29969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 31  CETKVIFK*FNVQSTNMDTRKLIEILRATIDPNQRQQAEEQLSQIHKI 174
           C   V+F   +VQS+++D  K ++ L++T+    RQ   +QLS   KI
Sbjct: 9   CCALVLF--VSVQSSSVDLEKSVKSLKSTVALLARQMMLQQLSMEEKI 54


>SB_19252| Best HMM Match : Sigma54_DBD (HMM E-Value=6.5)
          Length = 109

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 94  LIEILRATIDPNQ--RQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQ 240
           LIE L A + P+Q  R+QAEE L  +     F   L ++ +  +  + +RQ
Sbjct: 16  LIESLAAILSPDQEVRKQAEEHLKVLEVTEEFGVHLAELAIDTEGALAIRQ 66


>SB_17745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 481 IFLQNPDANSWMGALQCLYQLIKNYE--YHISEKRTPLIEAM-NLLLPMIYNLIVNLEP 648
           + L++ + + W G+++ L  L   YE  + + +  TP +EA+       +Y+L  N  P
Sbjct: 415 VALKDSNVSKWWGSVKSLGGLTDTYEWWHQLIDSDTPTLEALCGKFNEFLYSLTANFAP 473


>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
          Length = 1032

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +1

Query: 463 IVDKIHIFLQNPDANSWMGALQCLYQ-LIKNYEYHISEKRTPLIEAMNLLLPMIYNLIVN 639
           I+DK  + ++ PD       L CLY+ +I N   ++ E  T   E++ L      +    
Sbjct: 104 ILDKSDVDVEKPDKKMITMYLSCLYEKIIANPHGNLPEGITSSEESIALPSRDAESANQE 163

Query: 640 LEPDQSVESILIQ-KQILKCFYALTKYILPLDL 735
             PD  +E + ++ K++L+   A  + I PLD+
Sbjct: 164 EAPD-DIEGLPVKTKKVLEASPARMEQISPLDI 195


>SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)
          Length = 254

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 341 RSCSWMLNGIGSPSSRSLSCHPDVIK 264
           R CS+M   + SP S   SC PD+ K
Sbjct: 71  RYCSFMNPCVSSPCSEGYSCRPDLNK 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,429,117
Number of Sequences: 59808
Number of extensions: 507578
Number of successful extensions: 958
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)