Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2d08
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 62 3e-10
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 32 0.38
U97012-9|AAK39142.2| 995|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF016414-6|AAG24022.1| 323|Caenorhabditis elegans Serpentine re... 29 3.6
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 29 4.7
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 29 4.7
U39995-4|AAF99993.2| 675|Caenorhabditis elegans Potassium chann... 28 6.3
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 6.3
U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical pr... 28 6.3
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 6.3
AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans GDP-4-keto-6-... 28 6.3
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 62.5 bits (145), Expect = 3e-10
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Frame = +1
Query: 106 LRATIDPNQ--RQQAEEQLSQIHKIIGFAPALLQVVM--QNDVNIPVRQAGVVYLKNLIT 273
L+ T++P+ R++ EE L + G+ +LQ+V+ Q + +R A V LKN +
Sbjct: 8 LQQTLEPDAAIRKRGEEALRSLQSNPGYIIQILQLVVNEQQQIAPQIRIAAAVALKNFVK 67
Query: 274 SGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPER 453
W G + ++D R +++EA+ ++ L L I + DFPE+
Sbjct: 68 RNW-------GPAPEVEMGQEDEEQFRSMLLEAMFNTKSNVQEILSNALYLIAQRDFPEK 120
Query: 454 WTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEY 561
W +V + FL D N + +L + Q+ + + +
Sbjct: 121 WPDLVPYLSKFLNGADLNHLVASLASMEQIFRKFRF 156
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 33.1 bits (72), Expect = 0.22
Identities = 40/134 (29%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Frame = -3
Query: 527 CRAPI-QLLASGFCKKMCILSTI*VHRSGKSCFMIVFRQTHNCTLIISGAWTIASTMMSL 351
C PI Q S C + C TI SG SC +C S A T T +
Sbjct: 64 CTTPICQQQCSNQCNQQCTSITI---SSGPSC--------SSCQSACSSACT-TPTCIRT 111
Query: 350 IIARSCSWMLNGIGSPSSRSLSCHPDVIKFLR*TTPAWRTGMLTSFCITTCSRAGANPII 171
SCS + N GS S + C+ ++ TTP+ T ++ C CS G PI+
Sbjct: 112 CQRNSCSNLCN-TGSNSCTN-RCNSQCLQIC--TTPSC-TNTCSNSCSNACSNGGNQPIV 166
Query: 170 L*IWES---CSSAC 138
+ I S C ++C
Sbjct: 167 IVIPSSSRNCQNSC 180
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 32.3 bits (70), Expect = 0.38
Identities = 34/167 (20%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Frame = +1
Query: 67 QSTNMDTRKLIEILRA--TIDPNQRQQAEEQLSQIHKIIGFAPALLQVV--MQNDVNIPV 234
Q + ++I++L+ + D + ++ + QL Q+++ F L+ ++ M+ ++
Sbjct: 4 QPDQHELEQVIQLLQHAHSTDRDVQRNVQVQLVQLNEHQKFCCYLVYILSDMKEMIDATS 63
Query: 235 RQAGVVYLKNLITSGWQDKEREEGEPIPFNIHEQD-RAMIRDIIVEAIVQAPEIIRVQLC 411
R + LKN I + W N + QD + +R +++I +IR +
Sbjct: 64 RSLAGLLLKNNIRAKW-------------NKYPQDVKFFVRTTCLKSIGDQEPLIRATVG 110
Query: 412 VCLKTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKN 552
+ + TI+ + W ++D + L PD GAL L ++ ++
Sbjct: 111 IIVTTIVMEENMCDWPDLLDTLATVLMQPDELMQEGALGALQKVFED 157
>U97012-9|AAK39142.2| 995|Caenorhabditis elegans Hypothetical
protein C04E6.11 protein.
Length = 995
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = -2
Query: 579 SFLGNVVFIVLDQLIQTL*SAHPTISVRIL*ENVYFVHDLSPSLWKVMFYDSLQADTQLY 400
+FL +V + QLI+ S P +R + V+F + S K+ YD L T +
Sbjct: 377 AFLHQLVGRLSTQLIR---SHEPAHLIRDIANRVHFTFNNKYSKLKIRMYDDLLFATLML 433
Query: 399 SDYFRSLDDRLYY 361
D LDDRL Y
Sbjct: 434 KD--MDLDDRLRY 444
>AF016414-6|AAG24022.1| 323|Caenorhabditis elegans Serpentine
receptor, class h protein211 protein.
Length = 323
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 589 IEAMNLLLPMIYNLIVNLEPDQSVESILIQKQILKCFYALTKYILPLD 732
I A+ +P I+ + +P+ SV +L+Q L+CFY ++ LD
Sbjct: 144 IVALTYFIPFIFQVP---DPEISVPVVLMQLPTLRCFYKGPIFVFTLD 188
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 690 EMLLCSNKVYSTFGLDNQGC 749
++L C KV ST+GL N GC
Sbjct: 272 QLLTCDTKVDSTYGLANVGC 291
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
F28B4.3 protein.
Length = 2229
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 477 YFVHDLSPSLWKVMFYDSLQADTQLYSDYFRSLDDRLYYD 358
Y DL K FY S+ A+TQ + F++ D + Y+D
Sbjct: 1218 YLADDLGDD--KNNFYSSIAANTQFWIGLFKNSDGQFYWD 1255
>U39995-4|AAF99993.2| 675|Caenorhabditis elegans Potassium channel,
kvqlt familyprotein 2 protein.
Length = 675
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = +1
Query: 19 LVPRCETKVIFK*FNVQSTNMDTRKLIEILRATIDPNQRQQAEEQLSQIHKIIGFAPALL 198
++P ++FK +V + +DT + I+ILR + RQ A +L + K+I L
Sbjct: 174 IIPATILLLVFKGHDVDGSTLDTLRFIQILR--LFHVDRQMATWKL--LRKMIILGKWQL 229
Query: 199 QVVMQNDVNIPVRQAGVVYLKNLITSGWQD 288
+ + + A +VY + G QD
Sbjct: 230 MATYYITLVVGLSLATIVYSTEALAQGIQD 259
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 406 LCVCLKTII-KHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNY 555
L CL + KH F W Q ++ L+N D AL+ LY+L+ Y
Sbjct: 349 LITCLLCVSQKHFFLANWVQFLNSCLSHLKNKDPQVARVALESLYRLLWVY 399
>U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical
protein R01H2.5 protein.
Length = 315
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 289 KEREEGEPIPFNIHEQDRAMIRDIIVEAIVQA 384
+E E+ EPI +++E D IRD V A+V+A
Sbjct: 226 REYEDVEPIILSVNESDEVSIRD-AVSAVVKA 256
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 406 LCVCLKTII-KHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNY 555
L CL + KH F W Q ++ L+N D AL+ LY+L+ Y
Sbjct: 349 LITCLLCVSQKHFFLANWVQFLNSCLSHLKNKDPQVARVALESLYRLLWVY 399
>AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
protein.
Length = 315
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 289 KEREEGEPIPFNIHEQDRAMIRDIIVEAIVQA 384
+E E+ EPI +++E D IRD V A+V+A
Sbjct: 226 REYEDVEPIILSVNESDEVSIRD-AVSAVVKA 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,177,526
Number of Sequences: 27780
Number of extensions: 387409
Number of successful extensions: 975
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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