Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d08
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.44 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 401 TLIISGAWTIASTMMSLIIARSCSWMLNGIGSPSSRSLSC 282
           TLI +    +AST++S     SC W+    G   +RS  C
Sbjct: 9   TLINAAFLCLASTILSESAGTSCKWLSE--GGNDTRSADC 46


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 226 IPVRQAGVVYLKNLITSGWQDKEREEG 306
           IP+R    +  K++  SG++ K R  G
Sbjct: 535 IPLRMTAGIDPKSIFNSGYRPKPRMSG 561


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = -3

Query: 350 IIARSCSWMLNGIGSPSSRS 291
           ++   C W  + +G P S S
Sbjct: 7   VVMSCCCWCCDNLGGPGSSS 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,451
Number of Sequences: 438
Number of extensions: 4546
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)