Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d04
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08)                   27   9.1  
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                27   9.1  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          27   9.1  

>SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 926

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 340 VMSTVCGCKYSGSPCFATLSGAWCWIW 260
           V    C CK    PC  + +   CW+W
Sbjct: 66  VRGRACTCKLMPCPCGDSCTRTVCWLW 92


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +3

Query: 294 KQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLC-TGKYAPAV 464
           K   P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL      AP  
Sbjct: 325 KSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLIPLHVLAPLQ 384

Query: 465 EMDTNDVIAKIDDLT 509
            + T  V+  +  LT
Sbjct: 385 VVITLQVLTSLQVLT 399


>SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08)
          Length = 349

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 340 VMSTVCGCKYSGSPCFATLSGAWCWIWS 257
           V    C CK    PC  + +   CW+W+
Sbjct: 111 VRGRACTCKPMPCPCGDSCTRTVCWLWN 138


>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1931

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 387 AIELQEWLLEEVIPQVLCTGK 449
           AI + +W L+ VIP+ LCT K
Sbjct: 420 AIPVDQWNLDYVIPKPLCTTK 440


>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 296  AGRPAVFAPTHSAHYQIWRDSTDNEVQIALRHRITRMAFGGGHSSSAMH 442
            A + +VF P+ S+H + W D + ++  I  + R++R       SS + H
Sbjct: 1557 ANKKSVFRPSPSSHTKNWADFSPSD-NITKKARLSRRKRSEAFSSESDH 1604


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 260 VGMLKRRFVLAVDVDTYCPFTIYIF*TAGDVLGHKSDWLLITEHVS*RERVF 105
           + M +  ++ +V VD Y P   Y+   A  V   K +W+ + E+   +E+VF
Sbjct: 419 IDMNELYYICSVRVDGYTPLDQYVKTFAISVSNDKQNWIYVLENG--KEKVF 468


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,619
Number of Sequences: 59808
Number of extensions: 380158
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)