Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2d02
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 246 2e-66
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 207 1e-54
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 176 2e-45
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 148 5e-37
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 139 3e-34
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 132 5e-32
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 122 3e-29
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 119 4e-28
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 118 5e-28
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 98 1e-21
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 96 3e-21
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 85 7e-18
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 81 9e-17
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 78 1e-15
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 77 1e-15
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 75 8e-15
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 71 1e-13
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 68 9e-13
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 60 2e-10
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 60 2e-10
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 46 3e-06
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 33 0.024
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 33 0.031
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 30 0.22
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 30 0.29
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.51
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.5
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 27 2.0
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 27 2.0
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 27 2.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 3.6
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 26 3.6
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.2
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 25 6.2
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 25 8.3
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 8.3
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 8.3
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 246 bits (601), Expect = 2e-66
Identities = 107/170 (62%), Positives = 145/170 (85%)
Frame = +2
Query: 65 MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKL 244
M+ K+YD L KLLLIGDSGVGK+C+L RFS++ FT +FI+TIGIDFKI+T+EL GK+IKL
Sbjct: 1 MSTKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKL 60
Query: 245 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMIL 424
QIWDTAGQERF TITT+YYRGAMGI+L+YD+T++K+FD++ W N+++HA+E+V K+++
Sbjct: 61 QIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILI 120
Query: 425 GNKCDMEEKRVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELAEAI 574
GNKCD E++R VS E+G+A+A E G++F+E SAK N+N+D AF LA I
Sbjct: 121 GNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 207 bits (505), Expect = 1e-54
Identities = 92/168 (54%), Positives = 131/168 (77%)
Frame = +2
Query: 80 YDLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDT 259
YD LFKLLLIGDSGVGK+C+L RF+D+ +T ++ISTIG+DFKI+T EL GK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDT 64
Query: 260 AGQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCD 439
AGQERF TIT+SYYRGA GI++VYD+T++ +F+++ +WL+ ID +A E V ++++GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSD 124
Query: 440 MEEKRVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELAEAILDK 583
M +K+VV + A I F+ETSAK + N+++AF ++ I ++
Sbjct: 125 MVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKER 172
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 176 bits (429), Expect = 2e-45
Identities = 80/165 (48%), Positives = 114/165 (69%)
Frame = +2
Query: 80 YDLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDT 259
YD LFK +LIGDSGVGK+ +L RF+ N F STIG++F + + L KKIK QIWDT
Sbjct: 7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDT 66
Query: 260 AGQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCD 439
AGQER+ IT++YYRGA+G ++VYDIT + +FD++ +WL+ + EHA+ ++ M++GNK D
Sbjct: 67 AGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTD 126
Query: 440 MEEKRVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELAEAI 574
+ R VS E +A A E+ + F+ETSA N++ AF + I
Sbjct: 127 LLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 148 bits (359), Expect = 5e-37
Identities = 69/161 (42%), Positives = 106/161 (65%)
Frame = +2
Query: 92 FKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQE 271
FKL+ +G+ VGKT ++ RF + F T+ +TIGIDF KT+ L + ++LQ+WDTAGQE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 272 RFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCDMEEK 451
RF ++ SY R + ++VYDITN +F + KW+ ++ +DV +++GNK D+ +K
Sbjct: 72 RFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADK 131
Query: 452 RVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELAEAI 574
R V++E GE A+E I METSAKA N+ F ++A+ +
Sbjct: 132 RQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQML 172
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 139 bits (336), Expect = 3e-34
Identities = 68/178 (38%), Positives = 109/178 (61%), Gaps = 5/178 (2%)
Frame = +2
Query: 65 MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVEL----RGK 232
M K++YD L K++L G SG GK+C+L RF N + T+GIDF + + + + K
Sbjct: 1 MDKESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQK 60
Query: 233 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVE 412
+IKLQIWDTAGQE+F ++ +YYRGA G +LVYD+TN+ +F+++ WL +I A +
Sbjct: 61 RIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTIC 120
Query: 413 KMILGNKCDMEEKRVVS-KERGEAIAREHGIRFMETSAKANINIDRAFSELAEAILDK 583
++ G+K D++ +R VS +E E + +H ETS+ N++ F + I+ +
Sbjct: 121 VVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTIITR 178
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 132 bits (318), Expect = 5e-32
Identities = 74/178 (41%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Frame = +2
Query: 65 MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKL 244
MA K LL K++++G+SGVGKT I+ ++ + F+ + +TIG DF K V + K + L
Sbjct: 1 MAGKKKHLL-KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTL 59
Query: 245 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKW----LRNIDEHANEDVE 412
Q+WDTAGQERF ++ ++YRGA +LVYD+ N K+F+ + W L E
Sbjct: 60 QLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFP 119
Query: 413 KMILGNKCDMEE-KRVVSKERGEAIAREHG-IRFMETSAKANINIDRAFSELAEAILD 580
++LGNK D+EE KR+VSK + A + G I + ETSAK IN+ AF +A+ L+
Sbjct: 120 FILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALE 177
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 122 bits (295), Expect = 3e-29
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVEL-RGKKIKLQIWDTAGQE 271
KL+L+GDS VGK+ ++ RF + F STIG F +T+ + +KL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 272 RFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCDM-EE 448
R+ ++ YYR A ++VYDIT + + W++ + A E + + GNK D+ +E
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 449 KRVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELAEAI 574
+R V K EA A E + F ETSAK N++ F+ +A+ +
Sbjct: 136 RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKL 177
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 119 bits (286), Expect = 4e-28
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Frame = +2
Query: 86 LLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAG 265
+ K++++GDSGVGKTC++ +F + F+ + +TIG DF K V + K + LQ+WDTAG
Sbjct: 7 VFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAG 66
Query: 266 QERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANED---VEKMILGNKC 436
QERF ++ ++YRGA ++VY++ N K+FD + W + ++D +I+GN+
Sbjct: 67 QERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQI 126
Query: 437 DME-EKRVVSKERG-EAIAREHGIRFM--ETSAKANINIDRAFSELAEAILD 580
D + KR VS R + +HG + E SAK N N+ F ++ L+
Sbjct: 127 DKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLALE 178
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 118 bits (285), Expect = 5e-28
Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Frame = +2
Query: 71 KKTYDLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQI 250
+ TY +KL+++GD GVGK+ + + +HF + TI ++ K E+ G+ L +
Sbjct: 2 RSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLDV 60
Query: 251 WDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMIL-G 427
DTAGQE + + Y R G +LVY+IT+ +FD+I + + I ++D ++L
Sbjct: 61 LDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVA 120
Query: 428 NKCDMEEKRVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELAEAI 574
NKCD+E +RVVS+ GE +A+ ++ETSAK +N++ AF L I
Sbjct: 121 NKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 97.9 bits (233), Expect = 1e-21
Identities = 54/167 (32%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQER 274
++ ++G VGK+ + ++ +NHF ++ TI F K ++ +G++ +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDE 66
Query: 275 FHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRN--IDEHANEDVEKMILGNKCDMEE 448
+ + + + G G +LVY IT++ +F ++VK +R+ ++ E V +++GNK D+
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSF-EMVKIVRDKILNHTGTEWVPIVVVGNKSDLHM 125
Query: 449 KRVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELAEAILDKTA 589
+R V+ E G+A+A E + E SA+ N N+ RAF EL + ++K A
Sbjct: 126 QRAVTAEEGKALANEWKCAWTEASARHNENVARAF-ELIISEIEKQA 171
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 96.3 bits (229), Expect = 3e-21
Identities = 50/163 (30%), Positives = 92/163 (56%), Gaps = 1/163 (0%)
Frame = +2
Query: 92 FKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQE 271
FKL+L+GD G GKT + R F +I+T+G++ +I +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 272 RFHTITTSYY-RGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCDMEE 448
+ + YY +G GI +++D+T+ T+ ++ W R++ E++ ++ GNK D++E
Sbjct: 70 KLGGLRDGYYIQGQCGI-IMFDVTSRITYKNVPHWWRDL-VRVCENIPIVLCGNKVDVKE 127
Query: 449 KRVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELAEAIL 577
++V K + R+ +++ + SAK+N N ++ F LA ++
Sbjct: 128 RKV--KAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLV 168
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 85.0 bits (201), Expect = 7e-18
Identities = 47/171 (27%), Positives = 93/171 (54%), Gaps = 10/171 (5%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQER 274
K++++GD GKT +L F+ +F + TI ++ I + + G I+L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 275 FHTITTSYYRGAMGIMLVYDITNEKTFDDIV-KWLRNIDEHANEDVEKMILGNKCDM--- 442
+ + + Y IM+ + + + + ++++ KWL + + V+ +++ KCD+
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDLRGA 132
Query: 443 -----EEKRVVSKERGEAIARE-HGIRFMETSAKANINIDRAFSELAEAIL 577
+ +++ E G A A++ + +R++E SAK N ++ AF+E A L
Sbjct: 133 DEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVAL 183
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 81.4 bits (192), Expect = 9e-17
Identities = 50/183 (27%), Positives = 99/183 (54%), Gaps = 14/183 (7%)
Frame = +2
Query: 77 TYDLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWD 256
T +L KL+++GD GKTC+L FS F ++ T+ ++ + VE+ G+ I+L +WD
Sbjct: 2 TTELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWD 60
Query: 257 TAGQERFHTITTSYYRGAMGIMLVYDITNEKTFDDI-VKWLRNIDEHANEDVEKMILGNK 433
TAGQE + + Y + +++ + + ++ D++ KW+ + H ++ +++G K
Sbjct: 61 TAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV-LHFCSNLPILLVGCK 119
Query: 434 CDM-------EE-----KRVVSKERGEAIAREHG-IRFMETSAKANINIDRAFSELAEAI 574
D+ EE ++ ++ E G+ +A++ G +++E SAK N ++ F A A
Sbjct: 120 VDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARAS 179
Query: 575 LDK 583
+ K
Sbjct: 180 MLK 182
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 77.8 bits (183), Expect = 1e-15
Identities = 49/181 (27%), Positives = 94/181 (51%), Gaps = 14/181 (7%)
Frame = +2
Query: 83 DLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTA 262
+L KL+++GD GKTC+L FS F ++ T+ ++ + VE+ G+ ++L +WDTA
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTA 62
Query: 263 GQERFHTITTSYYRGAMGIMLVYDITNEKTFDDI-VKWLRNIDEHANEDVEKMILGNKCD 439
GQE + + Y + I++ + + + + D++ KW+ + H + +++ K D
Sbjct: 63 GQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV-LHFCSSLPILLVACKAD 121
Query: 440 M-------EE-----KRVVSKERGEAIAREHG-IRFMETSAKANINIDRAFSELAEAILD 580
+ EE + V+ E G+A+A++ G +++E SAK N + F A +
Sbjct: 122 LRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAML 181
Query: 581 K 583
K
Sbjct: 182 K 182
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 77.4 bits (182), Expect = 1e-15
Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Frame = +2
Query: 83 DLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTA 262
++ K+ +IGDS +GKT ++ + F T+G++F KT+ +R +I IWD
Sbjct: 8 NVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLG 67
Query: 263 GQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCD- 439
GQ F + A+ I+ ++D++ + T + I +W R N+ +++G K D
Sbjct: 68 GQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQA-RGFNKTAVPILIGTKYDH 126
Query: 440 -----MEEKRVVSKE-RGEAIAREHGIRFMETSAKANINIDRAFSELAEAILD 580
E++ ++K+ R A A + + F TS +IN+ + F + + D
Sbjct: 127 FMTFPREDQEEITKQARRYAKAMKASLVFCSTS--HSINVQKIFKIVLAKVFD 177
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 74.9 bits (176), Expect = 8e-15
Identities = 46/176 (26%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQER 274
K +++GD VGKTC+L ++ N F + ++ T+ ++ + TV + + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 275 FHTITTSYYRGAMGIMLVYDITNEKTFDDI-VKWLRNIDEHANEDVEKMILGNKCDM--- 442
+ + Y ++ + +T+ +F+++ KW + H V +I+G + D+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC-PGVPCLIVGTQIDLRDD 122
Query: 443 ---------EEKRVVSKERGEAIAREHG-IRFMETSAKANINIDRAFSELAEAILD 580
+ + ++ E+GE +ARE G ++++E SA + F E A LD
Sbjct: 123 PSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAIVAALD 178
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 70.9 bits (166), Expect = 1e-13
Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQER 274
KL+++GD GKT +L F+ +F T ++ T+ ++ + + GK ++L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKSVQLALWDTAGQEE 68
Query: 275 FHTITTSYYRGAMGIMLVYDITNEKTFDDI-VKWLRNIDEHANEDVEKMILGNKCDM--- 442
+ + Y A I++ + I + + +++ KW+ I+ +V +++G K D+
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLC-PNVPFILVGMKADLRSD 127
Query: 443 ----EEKR-----VVSKERGEAIAREHGIR-FMETSAKANINIDRAFSELAEAIL 577
EE R V ++ E +A+ G R +ME S+ +D F A L
Sbjct: 128 PVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAATRAAL 182
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 68.1 bits (159), Expect = 9e-13
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIK-TVELRGKKIKLQIWDTAGQE 271
KL+++GD G GKTC+L FS F ++ T+ ++ T K I+L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 272 RFHTITTSYYRGAMGIMLVYDITNEKTFDDIV-KWLRNIDEHANEDVEKMILGNKCDMEE 448
+ + Y + I+L + I + +++ KW + +H +++G K D+ +
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEV-QHFCPRTPIVLVGLKADLRK 134
Query: 449 KR------------VVSKERGEAIAREHGIRFMETSAKANINIDRAF 553
R V+ ++ +++A ++E SAK N ++ F
Sbjct: 135 DRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVF 181
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 60.5 bits (140), Expect = 2e-10
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQER 274
++L++G GKT IL++ TT I TIG F ++TVE R I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYRN--ISFTVWDVGGQDK 73
Query: 275 FHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWL-RNIDEHANEDVEKMILGNKCDM 442
+ Y++ GI+ V D + + + + L R ++E D ++ NK D+
Sbjct: 74 IRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 60.1 bits (139), Expect = 2e-10
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQER 274
++L++G GKT IL++ N T I T+G F ++TV K IK +WD GQ++
Sbjct: 23 RILMLGLDAAGKTTILYKLKLNQSVVT-IPTVG--FNVETVTY--KNIKFNVWDVGGQDK 77
Query: 275 FHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWL-RNIDEHANEDVEKMILGNKCDM 442
+ Y+ G G++ V D + + + L R I + D ++L NK D+
Sbjct: 78 IRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDL 134
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 46.4 bits (105), Expect = 3e-06
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 4/161 (2%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQER 274
++LL+G GKT IL + N T G F+I+T+E+ G ++ IWD GQ+
Sbjct: 18 RVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFG--FQIRTLEVEG--LRFTIWDIGGQKT 72
Query: 275 FHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRN-IDEHANEDVEKMILGNKCDME-- 445
+Y+ I+ V D ++ ++ L+ + E ++L NK D+
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 446 -EKRVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELA 565
+SK + + R SA +NI A S LA
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLA 173
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.5 bits (73), Expect = 0.024
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Frame = +2
Query: 95 KLLLIGDSGVGKTCIL-FRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQE 271
K+LL+G SG GK+ + FS+ T ID + V G + L +WD GQE
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQE 62
Query: 272 RFHTITTS-----YYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKC 436
F S +R ++ V+D+ + + D+V + ++ + + C
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVF---C 119
Query: 437 DMEEKRVVSKERGEAIAREHGIRFMETS 520
+ + +V ++ + + E +ETS
Sbjct: 120 LIHKMDLVQEDLRDLVFEERKAILLETS 147
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 33.1 bits (72), Expect = 0.031
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 386 DEHANEDVEKMILGNKCDMEEKRVVSKERGEAIAREHGIRFMETSAKANIN 538
+EH D+ GN+ + EE VVS + EAI +E G +E+S A+ N
Sbjct: 84 EEHQTADLLASNEGNEKNNEENNVVSSDSKEAITKESGAE-LESSEPASTN 133
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 30.3 bits (65), Expect = 0.22
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = -1
Query: 477 SPRSLLTTRFSSISHLLPSIIFSTSSFACSSIFRNHLTISSNVFSFVMSYTSMMPIAP 304
SPRSLLT FS PSIIF + S+F +H +S F++ S+ P+ P
Sbjct: 750 SPRSLLTKIFSEARKNAPSIIFINNVEKWPSLF-SHSFLS----MFLLLLDSISPLEP 802
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 29.9 bits (64), Expect = 0.29
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +2
Query: 326 VYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCDMEEKRVVSKERGEAIAREHGIR 505
VY ++ DDI L +D+H N D+ + +LG+K + + V+ + +E +
Sbjct: 720 VYSRSDIYLLDDI---LSAVDQHVNRDLVRNLLGSKGLLRSRCVILSTNSLTVLKEASMI 776
Query: 506 FMETSAK 526
+M + K
Sbjct: 777 YMLRNGK 783
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.51
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +2
Query: 92 FKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQE 271
F L+L G+SG+GKT F + F+TT S +G + K++ K ++++I +E
Sbjct: 29 FTLMLCGESGLGKT----TFCNTLFSTTIKSHMGPE-KVRAKHAE-KTVEIEITKAELEE 82
Query: 272 R-FHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEH 394
+ FH T G I N ++ +V+++ D+H
Sbjct: 83 KNFHLRLTVIDTPGFGDF----INNSGCWESVVEFIE--DQH 118
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.5
Identities = 28/83 (33%), Positives = 38/83 (45%)
Frame = -1
Query: 579 SSIASASSEKALSIFMFALADVSMKRMPCSRAIASPRSLLTTRFSSISHLLPSIIFSTSS 400
SS+ S+S+ + +LA S S ASP S T S+ S L S ++SS
Sbjct: 73 SSLTSSSAASSSLTSSSSLASSSTN----STTSASPTSSSLTSSSATSSSLASSSTTSSS 128
Query: 399 FACSSIFRNHLTISSNVFSFVMS 331
A SSI + L SS S + S
Sbjct: 129 LASSSITSSSLASSSITSSSLAS 151
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 2.0
Identities = 24/94 (25%), Positives = 39/94 (41%)
Frame = +2
Query: 284 ITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCDMEEKRVVS 463
IT S Y G ++ ++ K F D+ WL I +A + I+G C ++ +
Sbjct: 81 ITISDYAGPRKVLFLFLRATNKFFGDVTLWLDYI-HYAQKIKAVNIVGKICVAALQKHPN 139
Query: 464 KERGEAIAREHGIRFMETSAKANINIDRAFSELA 565
+A +H E S AN++ RA A
Sbjct: 140 NAELWVVACDH-----EFSINANVSAARALMNRA 168
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 380 NIDEHANEDVEKMILGNKCDMEEKRVVSKERGEAI 484
+I+ H N D + I + D+ EKR V K++ E I
Sbjct: 18 DIEVHPNVDKKSFIRWRQRDIHEKRAVRKQKMEDI 52
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 332 DITNEKTFDDIVKWLRNIDEHANEDVEK 415
+IT T+D + LR + EHA+E V++
Sbjct: 63 EITTHTTYDSNARVLRQLCEHASEPVDE 90
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 101 LLIGDSGVGKTCIL 142
+L+GD+ GKTCIL
Sbjct: 1873 ILVGDTATGKTCIL 1886
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 297 YDVVMVW--KRSCPAVSHIWSFIFLPLNSTVFILKSIPIVEIKVVVKWLSENLNNMHVFP 124
YDV + ++CP +S +F + L++ + I+ V+ W+ L++ +VFP
Sbjct: 101 YDVFATFCTVKTCPVMSAAANFDYTWLDNNRKPVHLPAPQYIEYVLAWIENRLHDQNVFP 160
Query: 123 T 121
T
Sbjct: 161 T 161
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 62 KMAKKTYDLLFKLLLIGDSGVGKTCILFRFSDNH 163
K + T D+ F+L+L+ D G K +L F NH
Sbjct: 30 KQYQSTKDVTFRLVLVQDIGDRKKTVL--FDSNH 61
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 57 FVKWPKKHTTCYSNCFSSVTPELEKRAY 140
F K K+T C +NC S +P + Y
Sbjct: 386 FSKMLAKNTVCVTNCVKSFSPRVSHIVY 413
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -3
Query: 487 GYCFTALLADNTFLLHIT---FIAKYHLFHILV 398
G CF N F LHIT +IA+Y + I V
Sbjct: 67 GICFGKFTKTNKFRLHITALDYIAQYARYKIWV 99
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = -3
Query: 340 CYVVYEHDAHSAAVIRRRDGVETLLPSSVPYLELYFLTP*FHCLYFEVDTYRRNKSRCEV 161
CY + + S + DG +T + LEL L P + V + + E
Sbjct: 292 CYRIKDEMIFSIDISLLEDGQQTPYVADDVQLELIMLDPYYRVNLVPVPSDSQTSQHYEA 351
Query: 160 VI*EPKQYARFS 125
V+ P Y F+
Sbjct: 352 VLVAPDHYGDFT 363
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 98 LLLIGDSGVGKTCILFRFSDN 160
L+++GD+G+ T +L + DN
Sbjct: 973 LMIVGDAGMSNTPLLLQLQDN 993
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,443
Number of Sequences: 5004
Number of extensions: 59385
Number of successful extensions: 228
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -