Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d01
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10486| Best HMM Match : FGF (HMM E-Value=5.7e-20)                   34   0.078
SB_51528| Best HMM Match : 7tm_1 (HMM E-Value=1.4)                     29   2.9  
SB_49231| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_31947| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   6.7  
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      28   6.7  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)         27   8.9  

>SB_10486| Best HMM Match : FGF (HMM E-Value=5.7e-20)
          Length = 344

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +1

Query: 121 RFLAVNPNGTVYGGTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTL 300
           RFLA+N NGT+  GT+ S   + TF+  +   + + I++  T  ++ +DR G+L   +  
Sbjct: 217 RFLAMNENGTI-SGTL-SQGVNETFELQSYGPSIVRIRHVKTGFFIAMDRRGRLRAKRVS 274

Query: 301 SDDCFMRE 324
                 RE
Sbjct: 275 EITALTRE 282


>SB_51528| Best HMM Match : 7tm_1 (HMM E-Value=1.4)
          Length = 205

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 372 KLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLS 488
           KLTY+A   +G      +S  R LGK  V     +KRLS
Sbjct: 147 KLTYIAGGQEGADGMTGLSSNRMLGKGFVLEKNTVKRLS 185


>SB_49231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 372 KLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLS 488
           KLTY+A   +G      +S  R LGK  V     +KRLS
Sbjct: 138 KLTYIAGGQEGADGMTGLSSNRMLGKGFVLEKNTVKRLS 176


>SB_31947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 231 NDDAISVNGKALECGVGVVRFNGSAVNGSVWIYCQKPPVNK 109
           ++ A SVNG+  E GV V  F     +  +WI   K  + K
Sbjct: 27  SESAYSVNGQPFESGVNVSVFKRPGADALLWIETAKQQMIK 67


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 159 RNH*IGQRRHHIQAPCR*QKSHRHSKRHYVC 251
           R+H     RHH   PC     HR  + HY C
Sbjct: 34  RHHHYCWYRHHYHYPCYRHYYHRCYRHHYCC 64


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 181 ADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREI 327
           A +  K+   DRN  V + A+T +  C+  CG +   +  + D FM E+
Sbjct: 113 AVSAIKKKMFDRNPHVAKYALTVLEACMKNCGSIIHDEIATKD-FMDEM 160


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 365 RSQVDVCGTEERRYSPKTTDFKGPQAGQV*RVRHDFIETLKFSYIHV 505
           R+++ +C    RR+   T+  KGP   +  R + DF+  +   ++ +
Sbjct: 59  RTRIRLCSFAARRFPCGTSHAKGPGKYETWRTKKDFLAKVNIVFVEL 105


>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
          Length = 878

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 180 RRHHIQAPCR*QKSHRHSKRHYVCVPVHRPV 272
           R HH +      K H+HS R   C P  RP+
Sbjct: 36  RSHHKEYSATSPKRHKHSDRRRPCNPSWRPL 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,130,137
Number of Sequences: 59808
Number of extensions: 364973
Number of successful extensions: 1137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)