Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d01
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    30   1.5  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    30   1.5  
Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z72518-2|CAA96700.1|  613|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 429 KGRKLGKFSVYAM--TLLKRLSFPIYTSCPNIKNETIVQHRK 548
           K +KL    V AM   L K L FP  T  P I+NE  +Q RK
Sbjct: 132 KLKKLSIKKVEAMRKALPKELQFPTATEVPKIRNEVKIQARK 173


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 160 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDC-FMREIM 330
           GT E  +  +  + ++V  + + I+   T  ++C+D  G+LY   S   S +C F+ E+M
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162

Query: 331 E 333
           E
Sbjct: 163 E 163


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 160 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDC-FMREIM 330
           GT E  +  +  + ++V  + + I+   T  ++C+D  G+LY   S   S +C F+ E+M
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162

Query: 331 E 333
           E
Sbjct: 163 E 163


>Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical
           protein K09A11.5 protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 223 CDFCQRQGA*MWCRRCPIQWFRRKRFRLDLLPKTAG 116
           C  C R+G  +WC  CP   F  K    D  P+  G
Sbjct: 53  CCICARRGEVLWCHSCPAS-FHIKCLGYDTDPQPNG 87


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 156  RRNH*IGQRRHHIQAPCR*QKSHR-HSKR 239
            +RN  +G+R+ +I+A  R QK H+ H KR
Sbjct: 2859 KRNDLLGERKENIRASMRLQKLHQEHEKR 2887


>Z72518-2|CAA96700.1|  613|Caenorhabditis elegans Hypothetical
           protein ZC374.2 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 162 NH*IGQRRHHIQAPCR*QKSHRHSKRHYVCVPVHRPVWPTVRIKN 296
           NH +    H  Q P + Q   +HS+ H+  VP   P+ P   I N
Sbjct: 142 NHHVHPHPHQQQTPVQPQTHGQHSQGHHQ-VPAQSPIAPAGPIVN 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,394,854
Number of Sequences: 27780
Number of extensions: 275208
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)