Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2d01
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    24   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.1  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.1  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 227 TMRFLSTARRLNVVSALSDSMVPP*TVPFGFTAKNRRLINSRPGIDV 87
           T R+LS   RLN+  ALS S+     V   F  +  +     PG+DV
Sbjct: 29  TTRYLSVCERLNL--ALSLSLTET-QVKIWFQNRRTKWKKQNPGLDV 72


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 141 KRNRLRRNH*IGQRRHHIQAPCR*QKSHR 227
           K+  L+R+H +    HH+Q+    Q  HR
Sbjct: 134 KQETLQRHHHLQNHHHHLQSTAV-QDHHR 161


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 229 IQNAITCVYLCIDRCGQLYGSKTLSDD 309
           I + I  + + +D C +L+G  T  DD
Sbjct: 106 IDSIINIIRVRVDACDRLWGVDTGVDD 132


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 208 VDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFM 318
           VD+  +V + +ITC   C+     L   +   D+  M
Sbjct: 59  VDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIM 95


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 208 VDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFM 318
           VD+  +V + +ITC   C+     L   +   D+  M
Sbjct: 59  VDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIM 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,060
Number of Sequences: 438
Number of extensions: 3581
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)