Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2c17
(250 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.11
SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14) 28 1.0
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 28 1.0
SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10) 28 1.3
SB_3509| Best HMM Match : XAP5 (HMM E-Value=7.6) 27 2.3
SB_52553| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_6635| Best HMM Match : FeoB_N (HMM E-Value=0.36) 26 5.4
SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_14312| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24) 26 5.4
SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13) 25 7.1
SB_29297| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 25 9.4
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0) 25 9.4
SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 125 NNIISSVKKTNSKHKKFVYWPKDTNALVPLVWRESKEI 12
+N IS + ++ +K V WP+ T+ +PL W + KE+
Sbjct: 166 DNKISHLTDQVTEWRKLVKWPRITSMCLPLQWSQWKEV 203
>SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)
Length = 526
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 227 LNSYIVPNYSLAQQYFDLYDENGFRTRIP--IQSACNNIISSVKKTNSKHKK 78
L S NYS ++Y++NGFR + I S +ISS K+ + ++ K
Sbjct: 334 LGSVFKSNYSKGVTLEEVYNDNGFRNSLGFLIPSNITKLISSPKEKDYRNVK 385
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -3
Query: 137 QSACNNIISSVKKTNSKHKKFVY----WPKDTNALVPLVWRESK 18
QS IIS V K N K KF+ WP D A V +W E K
Sbjct: 35 QSPYKAIISQVSKENLKTSKFIMSKKPWPMD-RAKVVRMWIEGK 77
>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
Length = 673
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 233 KILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTN 93
K+L+ Y V + S+ QY YDE R +I + A N + + T+
Sbjct: 97 KVLSCYFVLSGSVEAQYSIDYDEEDIRGKIAGKDAQGNSLCEINYTH 143
>SB_3509| Best HMM Match : XAP5 (HMM E-Value=7.6)
Length = 250
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 17 LCSLSTPTAPTRWYL*ANKQIFCVWN*SFSRLILCYCKRSE*VYECESRFRRT 175
L S+ PT W+L + ++ F FSR+ L + V EC+S + T
Sbjct: 128 LLSILAPTIRCTWHLNSLEEAFITTTARFSRMRLARGTSTTRVSECKSTYDST 180
>SB_52553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 157 FALVYLFRALAIT*YQA*KRLIPNTKNL 74
FA+VY+ R L +T A K+L P T L
Sbjct: 3 FAIVYMSRTLQVTQVHAQKKLTPVTTKL 30
>SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 152 TRIPIQSACNNIISSVKKTNSKH 84
TR+ IQ ++ S VKK N++H
Sbjct: 119 TRLKIQDGAPSLASDVKKNNTEH 141
>SB_6635| Best HMM Match : FeoB_N (HMM E-Value=0.36)
Length = 256
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 87 FGISLFHA*YYVIASALNRYTSAKAVFVVQIEI 185
F ++LF YY++ LNR T VFVV I +
Sbjct: 190 FALTLFS--YYLLGYTLNRITLFALVFVVGIVV 220
>SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 98 TNSKHKKFVYWPKDTNALVPLVWRESKEIKLP 3
T +K ++ Y+ K T L P+V E+ ++LP
Sbjct: 1005 TGTKQRQLFYYNKHTKPLNPIVPGETVRMRLP 1036
>SB_14312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 152 TRIPIQSACNNIISSVKKTNSKH 84
TR+ IQ ++ S VKK N++H
Sbjct: 64 TRLKIQDGAPSLASDVKKNNTEH 86
>SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24)
Length = 316
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/57 (21%), Positives = 19/57 (33%)
Frame = -3
Query: 209 PNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALVP 39
P LA + +EN + I C I + K ++ YW + P
Sbjct: 198 PQVDLALEILTKMEENVIKPSIETYDICEEIFGKASQPVQKVRRLAYWLTKLEEMFP 254
>SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)
Length = 626
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -3
Query: 242 LLYKILNSYIVPNYSLAQQYFDL-YDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYW 66
L + + + + P + +FDL Y R+R ++ + + + ++ +F+Y
Sbjct: 180 LYFSDVFNQLTPEGLQKKSFFDLMYLSGSKRSRGNLREQTRDTFA-IGFDQERNMRFIYS 238
Query: 65 PKDTNALVPLVWR 27
KD+N +PL W+
Sbjct: 239 KKDSNTTIPL-WK 250
>SB_29297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 167 ENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYW 66
E+ FRTR N+ +S+H+KFVYW
Sbjct: 54 EHAFRTRF------TNLHQGHAFIHSRHRKFVYW 81
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Frame = -3
Query: 143 PIQSACNNIISSVKKTNSK------HKKF-VYWPKDTNALVPLVWRESK 18
P+ S C NII S N+K H KF V+W N +V R S+
Sbjct: 717 PMPSLCTNIIGSSLSENAKEACLVGHWKFAVFWHISRNVVVQDSGRTSR 765
>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
Length = 475
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 224 NSYIVPNYSLAQQYFDLYDENGFRTRI 144
+SY++ + L ++FDLY +RT++
Sbjct: 80 HSYVMKYFHLFARHFDLYKYIRYRTKV 106
>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1642
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 97 LIPNTKNLFIGLKIPTRWCRWCGER 23
LIPN +F GLK RW CG R
Sbjct: 845 LIPNPLLIFQGLKQFCRWVIRCGCR 869
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,198,334
Number of Sequences: 59808
Number of extensions: 119207
Number of successful extensions: 382
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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