Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2c16
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   7.7  
SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_43608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +1

Query: 100 IKIDVICFFKTELALRVEFYV*NMIKK*RHLFFKTELALRVEFYV*NIIKR*CHLFFKTE 279
           IK +VI  FKTE+  + E  +   +     + FKTE+  + E  +   +     +  KTE
Sbjct: 106 IKTEVI--FKTEVTTKTEVTIKKEVIIKTEVIFKTEVTTKTEVIIETEVTTKTEVIVKTE 163

Query: 280 LALRVEFYV 306
           + +  E  +
Sbjct: 164 VIIETEVII 172



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +1

Query: 100 IKIDVICFFKTELALRVEFYV*NMIKK*RHLFFKTELALRVEFYV*NIIKR*CHLFFKTE 279
           IK +VI  FKTE+  + E  +   +     +  KTE+ +  E  +   +     +  KTE
Sbjct: 130 IKTEVI--FKTEVTTKTEVIIETEVTTKTEVIVKTEVIIETEVIIETEVTTKTEVIVKTE 187

Query: 280 LALRVEFYV 306
           + +  E  +
Sbjct: 188 VIIETEVII 196


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 353 YYNLK*Q*HHRLIVFYT*NSTRKASSVLKNK*HHLLI 243
           YY+ +   HH LIV  T  S+ ++ S  ++  HHL++
Sbjct: 16  YYHYQHYRHHHLIVTVTITSSSESPSPHRHHHHHLIV 52


>SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +1

Query: 382 VCCCVSFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM*RHMVFY 561
           V   +  I + + +  I   VI+I     + VN+  +  I +  I VNVT+I+   ++  
Sbjct: 225 VIITIIIIVNVIIITIIIFNVIIIIIVNVIIVNVIIITIIIDNVIIVNVTIIIDNVIIIT 284

Query: 562 IYFNTITTI 588
           I  N IT I
Sbjct: 285 IIINVITII 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,198
Number of Sequences: 59808
Number of extensions: 273285
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)