Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2c15
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    31   0.89 
AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      29   2.7  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    29   2.7  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    29   2.7  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    28   8.3  

>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 299 ILSRWLARRNLDCCTKTPILQCRAATIVFCAIWCKTANTIL 421
           IL+ WLA +    CT   I+      +V CA+WC +  T L
Sbjct: 84  ILTGWLAMKGAVYCTHPNIIYISG--MVVCALWCSSCMTAL 122


>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 57  CVGALYIFNHYLEPLGVSRFVKFKINCQIN*SKRYYKKNGKHEQHYARHHCERPNQ 224
           CV  L+IF+ ++ PLG   F  + I+   N SKRY +++ K+  +      E P +
Sbjct: 7   CVALLFIFSAFITPLG---FFYYTIS---NESKRYSEESEKNYGYQTLEFTESPEE 56


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 57  CVGALYIFNHYLEPLGVSRFVKFKINCQIN*SKRYYKKNGKHEQHYARHHCERPNQ 224
           CV  L+IF+ ++ PLG   F  + I+   N SKRY +++ K+  +      E P +
Sbjct: 7   CVALLFIFSAFITPLG---FFYYTIS---NESKRYSEESEKNYGYQTLEFTESPEE 56


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 57  CVGALYIFNHYLEPLGVSRFVKFKINCQIN*SKRYYKKNGKHEQHYARHHCERPNQ 224
           CV  L+IF+ ++ PLG   F  + I+   N SKRY +++ K+  +      E P +
Sbjct: 7   CVALLFIFSAFITPLG---FFYYTIS---NESKRYSEESEKNYGYQTLEFTESPEE 56


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 641 ISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHLFV 751
           + K+   +E  +R+R ++ TT   +KY+ EL+  + +
Sbjct: 376 VEKEARFSEEMERIRTESQTTSESLKYEHELVRKMMI 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,290,986
Number of Sequences: 27780
Number of extensions: 257905
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)