Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2c14
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   1.5  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   2.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.7  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.2  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 499 TYSFVSATRVKKSRFRNVRNHVTQCGRPKIN 407
           T+S  +A   + S FRN R+    C RP+ N
Sbjct: 381 TFS-TTANSCRSSTFRNNRDEYNVCFRPRNN 410


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 707 EEKYECKVCLER 742
           E+ YECK+CL R
Sbjct: 103 EKPYECKLCLLR 114


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 707 EEKYECKVCLER 742
           E+ YECK+CL R
Sbjct: 359 EKPYECKLCLLR 370


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = +2

Query: 23  INTRDNFRDNIAEHVFDMLLERHGSFENYPI 115
           ++ +++  + + EH    ++++H  F  YPI
Sbjct: 181 LHMKEDQTEFLEEHKIKEIVKKHSQFIGYPI 211


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/27 (29%), Positives = 10/27 (37%)
 Frame = +2

Query: 506 CDCCVRDWHINEDAWQRHATENPQCYF 586
           C    R W +  D        NP+C F
Sbjct: 528 CTASTRCWEVFMDGICNEDCNNPECLF 554


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,071
Number of Sequences: 336
Number of extensions: 3994
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)