Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2c14
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    44   3e-05
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   0.96 
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   5.1  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   6.8  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 16/166 (9%)
 Frame = +2

Query: 137 SLIVNGFKYNQVD--------DHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIA 292
           +L   GF YN +         D+V C  C     +W +D+     H+T SP C +A  ++
Sbjct: 43  TLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSCPWAYILS 102

Query: 293 EHESFGDNITINAVLVKEGRPKCVYRCMSNLQSRMDTFVN-FWPAALRDMI----TNIAE 457
              +   N    A+       KC          R  TFV+  WP   R       + +A 
Sbjct: 103 SKNNPNQNPQAAALT------KC----------REQTFVDKVWPYTNRPDYHCEPSVMAA 146

Query: 458 AGLFYTGRGDE---TVCFFCDCCVRDWHINEDAWQRHATENPQCYF 586
           +G  Y    D      C +CD  + DW  ++D +  H      C F
Sbjct: 147 SGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
 Frame = +2

Query: 368 RCMSNLQSRMDTFVNF-WPAALRDMITNIAEAGLFYTG--------RGDETVCFFCDCCV 520
           R M N   R+DTF    WP A +     +A  G +Y          R D   C+ C    
Sbjct: 17  REMCNYSKRLDTFQKKKWPRA-KPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSF 75

Query: 521 RDWHINEDAWQRHATENPQC--YFVLSVK 601
            DW  ++D  + H T +P C   ++LS K
Sbjct: 76  YDWEDDDDPLKEHITHSPSCPWAYILSSK 104


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 345 SFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQFFISASQY 193
           SF S  ++V+ S  +  + ++    Q    + C Y +H+SS  + I  + Y
Sbjct: 711 SFPSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASY 761


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 354 GLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAY 241
           G PSF   AL  ++ P DS S I     Q   + T  Y
Sbjct: 542 GNPSFVEQALQDLVQPTDSASQIFPLNPQSPSQFTIKY 579


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 161 YNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLV 340
           ++ + D +  E  E  ++ + E E I+Y     S + AY N I+      + + I+ +  
Sbjct: 504 FSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTN-ISNAMKAVNGLPIHPLFK 562

Query: 341 KEGRPKCVYRCMSNLQ 388
           K        RC   LQ
Sbjct: 563 KSKIRYAPDRCEQELQ 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,698
Number of Sequences: 5004
Number of extensions: 60727
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)