Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2c14
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   50   2e-06
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   46   3e-05
SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)                   39   0.005
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       29   4.1  
SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_35150| Best HMM Match : Phospholip_A2_1 (HMM E-Value=3.4e-25)       28   9.5  
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = +2

Query: 389 SRMDTFVNFWPAALRDMITNIAEAGLFYTGRGDETVCFFCDCCVRDWHINEDAWQRHATE 568
           +R+ TF NFWPA     +  +A AG  +TGR D   CF C   ++ W +++   + H   
Sbjct: 137 ARVRTF-NFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREF 195

Query: 569 NPQC 580
            P C
Sbjct: 196 YPDC 199



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 95  SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 271
           +F  +P  ++A +  L   GF +   DD V C  C+  +K W  D+    +H    P C
Sbjct: 141 TFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREFYPDC 199


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +2

Query: 392 RMDTFVNFWPAALRDMITNIAEAGLFYTGRGDETVCFFCDCCVRDWHINEDAWQRHATEN 571
           R+ TFV+ WP +       ++ AG +Y G  D   C+ C   +R+W  ++  W  H   +
Sbjct: 134 RLTTFVD-WPESSPVRPWELSSAGFYYLGDQDSVKCYKCGVALRNWEPDDLPWVEHEKWS 192

Query: 572 PQCYFVL 592
           P C  V+
Sbjct: 193 PHCPLVI 199



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 152 GFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 271
           GF Y    D V C  C   ++NW  D+     H   SP+C
Sbjct: 156 GFYYLGDQDSVKCYKCGVALRNWEPDDLPWVEHEKWSPHC 195


>SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)
          Length = 141

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = +2

Query: 374 MSNLQSRMDTFVNFWPAALRDM---ITNIAEAGLFYTGRGDE---TVCFFCDCCVRDWHI 535
           M+  + R++TF + WP    D       +A AG ++    D+     CF C   +  W  
Sbjct: 10  MNMEKKRLETFKD-WPFNHMDCKCTAEKMAAAGFYHCETDDDPDVARCFVCFKELDGWEP 68

Query: 536 NEDAWQRHATENPQCYFV 589
            +D WQ H   +P+C FV
Sbjct: 69  EDDPWQEHKKHSPKCEFV 86


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 244 IFNTLVFGPIFYFCFTILAHNVIVDLIVFK 155
           IFNT +  PI+Y  FT+L   +I   I+FK
Sbjct: 485 IFNTSLVTPIYYVMFTLL--TIIASAILFK 512


>SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 322 GNVVAKRFVLSNLVGIRAIRRQGYVCIF-NTLVFGPIFYFCFTI 194
           G++V  ++V+   + +RA+R QG++ I  +TL   P +Y  + I
Sbjct: 65  GHLVIGQYVIKGTLLLRAVRYQGHLVITGSTLSIAPCYYGQYVI 108


>SB_35150| Best HMM Match : Phospholip_A2_1 (HMM E-Value=3.4e-25)
          Length = 174

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 576 CGFSVACRCQASSLICQSRTQQSQKKHTVSSPRPV*KSPASAMFV 442
           CG+   C+C A++++C  R  +  KK+ + +     KS A A +V
Sbjct: 126 CGYE-KCKCDAAAVVC-FRRNRFNKKYRLYNKNKCNKSTALAKYV 168


>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 414 KLTNVSIRDCKLDMHL-YTHLGLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYS 238
           K  + S  D KLD       +    + +TA  V  SP ++CS      +QY +K+T   S
Sbjct: 519 KERSTSCTDVKLDFAADMPRMPCAVYENTARRVTGSPGNNCSLAAKPSSQYTEKLTDRES 578

Query: 237 IHSSSDQ 217
           + +  D+
Sbjct: 579 LTTRQDK 585


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,805,484
Number of Sequences: 59808
Number of extensions: 477717
Number of successful extensions: 1420
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)